BtaINT0166389 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008943 | ZSCAN12
Description
Bos taurus zinc finger and SCAN domain containing 12 (ZSCAN12), mRNA. [Source:RefSeq mRNA;Acc:NM_001077138]
Coordinates
chr23:30079857-30081203:+
Coord C1 exon
chr23:30079857-30079976
Coord A exon
chr23:30079977-30080716
Coord C2 exon
chr23:30080717-30081203
Length
740 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GATGATAGCTTCTCCCTCAGTTC
3' ss Score
2.8
Exon sequences
Seq C1 exon
CTTCTGCTGGCCTCCTGGGGCTGCGGTTGAGCGAGCTTTTGCTGCGAACGCGGCGGGTGGGCTGCTGGCCGTCTTCCGGCCAGGCTGGAGCGGGGCATCCTCTGGTGCTCACTTGCCCAG
Seq A exon
GTGGGTCCGCGAGAAGCTACTTGAGGCAGAAGCTAGCCCCCAGCCCTCTGAGAAGGGGGGTCACAGCCCGGGATGAGGGGGAGACCCGGCTGTGCGCCTCATACCTCCTGGGCTTGCCTCGCGCTGTGTACCCTTCTTGATTCTGCGCCATCTGACATTTCCGAACACTCGTCGGTCACAGGCGCTGACCCACGTCCTAGGGCCTCTTTTTCAAGCATCCCTTTATATTTAGAATTACAGGTACTAGGGTAGAAGAGGGCCTGAAAAAACAACGTCTCCAGCTTTTTTGCTTGATAAAGAATCAGGAGCAGAGAGATTAAGTCCCTGCGGAAATAAATTCATGTAACTGCAGCTTTTATGACAGTGATTTCCCATTATGCATCATCTGAGTTTTTAAAGAATTTAAAAAGAAACTACTCAATGATGTCTCAGCTTTTTGTTATAATTTGTTTGCTGTAAATGTTTGTTTATTCCATTTAATTCTCCTTTTTTCTATTACTAAGTGGAAATATTTCCTTCTTAGTCTTACTTTTCTTGTCCTGAAAATCCTGAAACAACTTAGCACCTTTTACTTATTCTTTTTCTTTAAATTAGTCTACTGAGTCTTTTTTATCAGAGCATTTCTCTGAGTATAGTAGATTACCCTGGAGGCAGCTTTCGAGGTGCATATTTAAATTCTTAGAATTTGCAATTTTTGTTTATGGTGTAGTTTGGGTTAATGATGATAGCTTCTCCCTCAG
Seq C2 exon
TTCCAGCCAGAAAAAAACGACACAGGAGATCTTGCTTGAAGCATTGATAAGCTTTTGTATAGCAATGATGGCATATACTTGGTCTATCCAGGCCATGAAGGACCGGGAAGAACTTTTGGAAGTAAAGATAGAGGAAGAGGAGCTGGAGGAGGAGCATAAATATGCCACTACACAGGATCAGAACCTTCAAAAGAACACCACCCACAGTAGGGAGGTCTTCCGACGGTACTTCAGGCAGTTCTGCTACCAGGAAACATCTGGGCCCCGTGAGGCTTTGAGCCGACTCCGGGAACTTTGCCATCAGTGGCTGAAGCCAGAGACCCACACCAAAGAGCAGATTCTGGAACTACTGGTGCTGGAGCAGTTCCTGACCATCTTGCCTGAGGAGCTCCAAGCCTGGGTCCAGGAACAGCATCCAGAGAGTGGGGAAGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAGTTGGATGAGCCAGGATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008943:ENSBTAT00000011774:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.264
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=67.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTCTGGTGCTCACTTGC
R:
TTTGGTGTGGGTCTCTGGCTT
Band lengths:
356-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]