HsaINT0188793 @ hg19
Intron Retention
Gene
ENSG00000158691 | ZSCAN12
Description
zinc finger and SCAN domain containing 12 [Source:HGNC Symbol;Acc:13172]
Coordinates
chr6:28365781-28367544:-
Coord C1 exon
chr6:28367434-28367544
Coord A exon
chr6:28366251-28367433
Coord C2 exon
chr6:28365781-28366250
Length
1183 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AATGATGGCTTATTCTTCAGGAC
3' ss Score
7.18
Exon sequences
Seq C1 exon
GCTTCCGGCCTTTGTGGGTCACTTTTGATGGGTTCCGGGTCCCAAAAGGGTTCGAGGCCTCTTGCCTTCGCTCCGTAGGAGGGAGTTCTCTTCTGGCCCTGGGGGCCGCAG
Seq A exon
GTGAGCGATGTTGTGCTCTGTACGCTGCGAGCAGGTGGGCGGGAGATTGCTGTATTCCAGCTGCTGGGCCCCTCAGGCCCTGGCCGGTGCAGAGTGGACCCCGGTCCTCCCAAACCCAGGCGGATCCGCGGGAAGCTCTCCCTCCCCAAAGTGCGTTGGGACATTAGGATGAGGGTTTGGCTCCCAGTCTCTGCAGCAATTCCAGGCTGTAAGGCCCATACCTTCCGCGTTTGCTTCGGGCTGTGTATCCTTGGGTTCAGCGCTTACCGACATTTCTGGACAGTGGTGGGTCACAGACGCTCGCCGGCGTCCTAGGGACCCTTTCCTGGGCCTTCCTCACTTCAGATTATAATCACAGACCACGAGGTTAGAGGGAAGCCTTAAAGAGTAACCTCTTCAGCCTTCTCACTTTATAAATGAAGAATGAGGAGCAGAAAGATTAAGTCCCTGAAGAAATAAATTTACATGACTGTAGCTTTTGTGATTTCATGGTTTCCACCAGACATCTGGACATTCAAAAGATAAAAGTAACTAATCAAGGATGTCCTAACCTTTTGTTATTATTATTTACTTGATCTAAATGTTAGTTTTATTCCATTTGTCTTTCATTTAGGACCAAATGAGAATAAGTTTACCAACAAGTCTTACTCTTAAGTCCTGAAACAACTTGGCACCTTTCCTCAGTCTTTCTCTTTAAATTAGTCTAATCTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCCCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGCGCCCGCCGTCACGCCCGGCTAATTTTTTTTTTTTTTTTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGACTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCTAAATCGGTCTAATCTTAAGTCTTTTCTATCAGAGTATTTTTCTGAGTAAGTATTGTACATTAATCCGGAGGTCAGATTTCAAAGGTCATAGTTAAGTTCTCAGAATTTGCAGTTTTACTTTATGGTGGAGTTTGTATTAATAATGATGGCTTATTCTTCAG
Seq C2 exon
GACTGTCCAGGAATACAGTTTCCAGGTGAGATCTTACTTGAAACACCGGTAGTTCTAGCACAGCTAAAATGGCATCTACTTGGGCTATCCAGGCCCACATGGACCAGGATGAACCTTTGGAAGTAAAGATAGAGGAAGAGAAATATACCACCAGACAGGATTGGGACCTGCGTAAAAACAACACCCATAGCAGAGAGGTCTTCCGTCAGTACTTCAGACAGTTCTGCTACCAGGAGACATCTGGTCCCCGTGAGGCTTTGAGCCGACTCCGAGAACTTTGCCATCAGTGGCTGAGGCCAGAGACCCACACCAAAGAACAGATTCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGACCATCCTACCTGAGGAGCTCCAGGCCTGGGTGCAGGAGCAGCATCCAGAGAGTGGGGAGGAGGTGGTGACTGTGCTGGAGGATTTAGAGAGAGAACTGGATGAACCAGGAGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158691-ZSCAN12:NR_028077:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.231
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0202312=SCAN=PU(97.9=70.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGGTTCGAGGCCTCTTG
R:
GTTCTCGGAGTCGGCTCAAAG
Band lengths:
344-1527
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)