BtaINT0166400 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019555 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr3:112936526-112938847:-
Coord C1 exon
chr3:112938763-112938847
Coord A exon
chr3:112937210-112938762
Coord C2 exon
chr3:112936526-112937209
Length
1553 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATCTTCTTCCTTTTGTATAGGAG
3' ss Score
8.1
Exon sequences
Seq C1 exon
GAAGCCCTGGGTCCCGACAGACACGCTGAGAAGGAATTCTGCACGGACCCCCCAGGAGACAACTGTGGGAACGGCTTGTCCCTGG
Seq A exon
GTAAGGAAATTGTGCTCTCTGGATAAGATATGGTTGGGTTTGGGTACACTCAGTTCCCATGGTGCGTTTCCTCACTCCCTAAGACTCGTAGCTCTGAGAAGTCGCTGGAATTTCAGACCCGGCGAGAAGACATGCTCTCTGTGGCCAGCATGGTGGCCGCAGGGCAGGGGTGTGGGGAGTGGATTTCTGGGCTGGCAGGCTGGCTGCCAAGAGCCTGCCTGCTCAGGGCTCATTATCCTCATATCCTCAGTACTCACCCCCGTCTTGGGGCTGCGCCCAGCCTGCCGGTCCAGAAGAAACCCGACTGGGATGACCCAGAGGGATAGGATGGGGAGGGAGGTGGGAGGAAGGTTCAGGATGGGGATCACATGTACACCCGTGGCGGATTCATGTTTTTTATTTTTTTAGGATAAAAAAAAAAGAAACCCAGTCTTTTCAGCATCAAACAGGGTCCATCTCTCATAGCAGAGTCAAGTGAACTAAGCCCAGGAGATTGATGCATTTAAATCACAATGCCAAAGAAATATCACAGGGCTCAAAATCCTTGCAGCCCGTATGACCAGCACAGACGCTTTCTCTGTAGGCACATCTTCACGGGAAGTCAAGCCATAATGAACATTTCCTGGTGGAGTATAAGATCAGTGAGAGGGGAGTGAGACACAAGAGCAGAATCAGGTAGAGAGTCGGTGCCAAGTCTGACTCTGGGCAGTAAAGTGAGACACTAGGAGCTGTTGGCTACTTGCTGGGCAGTGTGTCCTTTTTACACATGATGAAAAGCGTGCCCCCCCCTTTTTTTTTACAGTGATTTCTGGGGAAAATAGTCTTCAAAGAACAACCTTTGGGAAATGCTGAACTAGATAATCCTTAAGCCTCTTTTAGCTCTAAACTCTTTCATCTGGTTTTCTTCAACTATTTATTTTAATTAAAGGCTTCCTATTTGTTGGGGTCAGGAGCTCTTGGGACACTTGTCCTTTAAATCTGGCTAACTGTTTTGACATCCACAGTATTGGATGTCCAGAGGAGGGCGTGCTCCAACCGCAGTACAGATTGGCTTGGCAGTACCACCCAGCAGACCTGGGTTTTTTCTTTCTCTCGCCCTCGCCAGCCTTTGTCTTAGTTTTGTGTTAAAGCTATTTTGTGTAGGTGCAAAAGGTAGGTGCCAGTGGCATTTGAGACCTCAAGTTTCTAGCTAAGAGAAACTCAAATCAGACACACATGTGCACACACAGCCTTCCTTCCAGCCATGAAGTTTTTTCTGATTGGTCTTAATTTAGAGTATGTGCCCATCTGTGGACCAGTAACAGCCCCTCTTTTGTATGATGTATTTTATCACACCAACCAAAAAGCAAATAAACAAAGCAGGCAAGTCAGTATATTTCTGGGGCGGTTACCTCTAGTGAGGTAACCTTTCCTTTCAGTCCTTTTAAGGGATTAGCATGGAAATTTCTCATTAGTTTCTTGGAGTCAAATGATGTGTAAACGACTTTTTAGACAAAATGCTTTGCTCGACAGATCATTTCTACTTAATCATGGATCTTCTTCCTTTTGTATAG
Seq C2 exon
GAGTTCCGGTTTCAAAACCAACCATCATTGCCCAGCAAGAGCAGGGACCAGAGTTTTGGGGTCCAAGACTTGTAAATTCTGGAAAAAAGAACTCTGCAGATTACAGCGTGGATCCTGAGCAGACTAAACCAGCTCAGGCATTGGCCTGGAGGGACTGCAAGACCTGGGAAGAACGGTGCCCGGCGCCCGTGGAGGATGTGAAAGTGTCGGGTGTGCACTGGAGCTACGAGGAGACCAAGACTTTCCTGGCGATTTTGAGCGAGTCGCCTTTTTCTGAAAAGCTCCGGACTTGTCACCAGAACCGCCAGGTGTACCGAGCCATCGCAGAACGGCTGAGGGCACGGGGCTTCCTACGGACGCTGGAGCAGTGTCGCTACAGGGTCAAGAACCTGCTACGGAATTACCGGAAAGCCAAGAGCAGCCACCCGCCGGGGACCTGCCCCTTCTACGAGGAGCTGGAGGCCCTGGTTAGGGCTCGGACAGCCATCAGAGCCTCGGACGGCCCAGGAGAGACTGTGGCTCTCCCCCGGCTAGGGGACAGTGACATGGAGGTGGATGAGCAGGAAGAAGGGGGCTGGGAGCCAGAGGAAACGGCAGACGACTGTAATGGTGATGACGTGGCCACCGAGTCCATCCAGGGGCCTGGGATCCCAGGGGGCCCAGCTCTGCTCCAGAGTCGTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019555:ENSBTAT00000026057:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=37.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGAATTCTGCACGGACCC
R:
GGTGACAAGTCCGGAGCTTTT
Band lengths:
353-1906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]