BtaINT0166401 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019555 | ZSCAN20
Description
zinc finger and SCAN domain containing 20 [Source:HGNC Symbol;Acc:HGNC:13093]
Coordinates
chr3:112933623-112937209:-
Coord C1 exon
chr3:112936526-112937209
Coord A exon
chr3:112934052-112936525
Coord C2 exon
chr3:112933623-112934051
Length
2474 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
GAACTCTTCACTCCTGACAGCAG
3' ss Score
5.21
Exon sequences
Seq C1 exon
GAGTTCCGGTTTCAAAACCAACCATCATTGCCCAGCAAGAGCAGGGACCAGAGTTTTGGGGTCCAAGACTTGTAAATTCTGGAAAAAAGAACTCTGCAGATTACAGCGTGGATCCTGAGCAGACTAAACCAGCTCAGGCATTGGCCTGGAGGGACTGCAAGACCTGGGAAGAACGGTGCCCGGCGCCCGTGGAGGATGTGAAAGTGTCGGGTGTGCACTGGAGCTACGAGGAGACCAAGACTTTCCTGGCGATTTTGAGCGAGTCGCCTTTTTCTGAAAAGCTCCGGACTTGTCACCAGAACCGCCAGGTGTACCGAGCCATCGCAGAACGGCTGAGGGCACGGGGCTTCCTACGGACGCTGGAGCAGTGTCGCTACAGGGTCAAGAACCTGCTACGGAATTACCGGAAAGCCAAGAGCAGCCACCCGCCGGGGACCTGCCCCTTCTACGAGGAGCTGGAGGCCCTGGTTAGGGCTCGGACAGCCATCAGAGCCTCGGACGGCCCAGGAGAGACTGTGGCTCTCCCCCGGCTAGGGGACAGTGACATGGAGGTGGATGAGCAGGAAGAAGGGGGCTGGGAGCCAGAGGAAACGGCAGACGACTGTAATGGTGATGACGTGGCCACCGAGTCCATCCAGGGGCCTGGGATCCCAGGGGGCCCAGCTCTGCTCCAGAGTCGTATTG
Seq A exon
GTAAGAACTTTGGGGCTTAGTTGGATTCAGATTCCAAACCTCCTACCAACCAAACCTCTGCTGTAGTTCAGGACACAGACTGCCAGTCTGGATCGATGCTGCTGGAGCAAGGTCAACCTCAAGCTCTGATTCTCTCTCCTGTGGTCAGTTCTCCTTGTCTGAGTTTCCTTAGAGAAGCAAACACTTAAAAACTTTTTTTTTTTTTAATTTTGATACAGTTTTTCAAGGTTACTTTCCATTTACAGTTATTGAAAAATTATTGGCTCTATTACCCATGTTGTACAACACCTGAGAGTTTGAGCCTGTCTTACACCCAACAGTTTGTGCCTCCTACTTCTTACCCCTATATCCCCCTTCCCACTCACCACTGGGTAACTACCAGTTTGTTCTCTATACCTGTGAGTTTGCCCTTTTGTTATGTTCACTAGTCTATTGTATTTTTTAGATTCCACACGTAAGTGATATTATGCAATATTTATCTTTCTCTGTCTGACTTATTTCACCTATCGTAATGTCCTCCAGGTCCGTCCATGTTGCTGCAAATGGCAAAGTTTTGTTCTTTTTTATGGCTGAGTAGTATTCTATTATATATAAATATATATAGGTATATATACACACACACCACACCTTCTTTATCCGTTCATCTGTTGATGAACACTTAGGTCATTTCCATGCCTTCACAATTGTAAATAGTGTTGCTATGAACATTGGGGTGCATGGATCTTTGCAAATTAGTGTTTCTGGTTTTTTTTGTAAATATACCCAGCAGTGGGATTGCTGAGTCACTTGGTAGCTTTATTTTTAGTTCTTTGAGACACCTTCATACTGTTTTCCACAGTAGCTGCATCAGTTTACATTCCCACTAACAAGGTACAAGGAGTCTCTTTTGTCACATCCTCACCAACATTTGTTATTTGTAGACTTTTGATACCAGCCATTCTGACAGTTTTGAGGTGATGTCTCTTATTGCTTTGATTTGTATTTCCCTGATGATGAGCAGTATCTGAGTGTCTTTTCATGTGTTGGTCATCTGCATTTCTTCTTTAGAAAAATGTCTCTTCAGTTCTTCTCTTTTTTTCTTACTTCTTATTTCTGGCTGCGCTGGGTCTTCCTTGCTGTGCCTGGGCTTTCTCTCGTTGTGGCAGACGGGTCTATTCTAGTTGCTTTGCTCAGGCTTCTCGCTGCAATGGCTTCCCTTGTCTCAGAGCACAGGCTCTAGGTGTGTGGGCTTTAGTAGTTGCAGATGCGGGCTCAGTAGTTTTCTACTCATTTCTTAACCTGAGTTATTTCCTTTTGTTGATGTATGAGGTGTTCATATATGTTGGATAGTAATCCCTTATTGGTCATATCGTTGGCAGATATTTTCTCCCATTCAGTAGGTTGTCTTTTCATTTTGTCGATGATTTCCTTCACTGTGCAAAAAAGAAGCAAACACTTAAAACCTTACGGGACCTTAAAGAGCTAATTCAGTGTTTCTCAGAGGGTATTAATGGTAGTATGGGGATGATCATAAGTGTTAACATGAGTGAACTTTTTAATTTTATGTGTATGAGCACATCAGCCTGTGATTTCACAAGTAGTAAATATAGGTAAAGAAAGATATTGAGTGAAGTATTTCATTGATATAGCGGAAATCATGACAGTGTATACTTGAACAGCATATGTTGAGGAAATACCCAGTCACTGCAAAAGTGGAAACCCAGAAGGCCAGGCTATGAAGTGTCATCTCTAAAGACACACAAGAACCAGAGCTCAGGGCTCCCGCCTCCACTCTTAGGTGGGTTTCCCTCCACCATGTCGCTTCCCTGGCTGCATCCTTTACCTGCAGAGGCACTGAAAATAGATCACCTCCTTTTCCTTCTTCCACAAAAGAGGAAGGGGCATCCTCAGTTGGATTCTCTTACAACGTTATCTGAAGGGATTCTCAGTTTGTTAAAAAGGAAATTTATAAAGCAAGTAGAGGACATGTATTGAATGGATGTGGAGATACAGAGAGTCTCCTGTATCTTGGTTATAGGCCTTTCCTTGATACAGTCAGCTGAAGTCAGGGGGCTGGTCACCTGGTATAACACAGCTCCTTAAGTCCTCCCCTTTAGCCAAGACTCTTAAATATTTATTATTTACTTATTTTTTACTTCTGGCCATGCCCCACGGCATGTGGGATCTTAGTTCCCTGACCAGGGATTGAACCTGCACCCCCTGCATTGGAAGTGTAGAGTCTTAACCACTGGACTGCCAGGGAAGTCCCAAGACACTTAAGTATTAATAGACTCTCTTAGAAGGAGGTGGGGGTGGGAAGCCCTGGCATAGCCTTTCAAGAAACAAGGGTATACTGTTTGCTGGTGCCCTAGGCACCTGGGTAATCTCCACAGTGCCTGTGTTCTAGGTGTTTAGCAGAGCAGGTGACCCTGATCCCTGATGACCTAGGCAAATCTCATCAAGTCTCTCAATTTTGAACTCTTCACTCCTGACAG
Seq C2 exon
CAGGTGTGCACTGGGGCTACGAGGAGACCAAGGCCTTCCTGACCATTCTCAGTGAGTCCCCATTCTCTGAGAAGCTTCGCACCTGTCACCAGAACAGCCAGGTGTACCGGGCCATTGCAGAGCGGCTGTGTGCACAGGGCTTCCTGAGGACCCTGGAGCAGTGTCGTTACAGATTCAAAAACCTCCTTCGAAGCTACCGAAAAGCCAAGAGCAGCCACCCACCTGGGACCTGCCCCTTCTATGAGGAGCTGGACTCGCTGATGAGGGCTAGGACTGCGGTTAGAGACATGGGGACCGGCGGGGAGGCAGCAGGTCTCCCTACTTCTGATCAGAGCAGTACCGAGGTTGTCAGCCAGGAGGCTTGGGATGAGATGGCAGGTGAAGATGTCATCAGACCTCCAACCCCAAGTCCTAAAACCTCAGACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019555:ENSBTAT00000026057:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=NA C2=0.368
Domain overlap (PFAM):
C1:
PF138371=Myb_DNA-bind_4=WD(100=37.6)
A:
NA
C2:
PF138371=Myb_DNA-bind_4=WD(100=59.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]