BtaINT0166404 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030956 | ZSCAN21
Description
Bos taurus zinc finger and SCAN domain containing 21 (ZSCAN21), mRNA. [Source:RefSeq mRNA;Acc:NM_001035368]
Coordinates
chr25:36926342-36927311:-
Coord C1 exon
chr25:36926823-36927311
Coord A exon
chr25:36926535-36926822
Coord C2 exon
chr25:36926342-36926534
Length
288 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCTTTCATAATTGTCTCTAGGTG
3' ss Score
9.87
Exon sequences
Seq C1 exon
GTTTAACGTGTAGCCCTAAAGAACCAGAAACCCACAGGAACCAATATTCCTGCTCCACGGAATCCTGTCTGTAGTGACAGCTGTTTCTGGAGTACCTCCGAGATGAAGGTGCTGGGCATGGCCACAGTTCTGGGCCCTAGGCCTCCACAGGAGCAGGGGCCTGTGATTGTGAAGATTGAGGAGGAGGAAGAGAAAGGGAAGCGCCTTCCCATGGAGATATTCCGCCAGCGCTTCAGGCAGTTTGGGTACCACGACACCCCTGGCCCGCGGGAGGCCCTCAGCCAGCTCCGGGTGCTCTGCTGCGAGTGGCTGCGGCCCGAGATCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTCGAGCAGTTCCTGACCATCCTGCCCCAGGAGCTCCAGGCCTGGGTGCAGGAGCACTGCCCAGAGAGCGCCGAAGAGGCCGTCACTCTCCTGGAGGATCTGGAACGGGAGCTGGATGAGCCGGCACCGCAG
Seq A exon
GTAGGCCGGGGCGCCCTCCCCCGCGAGATTGAGAGCCCAGCGGACCAGGCAGGGGTGGGTGTGTCCACAATGCTGAGAGTGACTGACAGGACCTTCCGCCGAGCTAGACCGTCTTTCCTCCTGGTTTTCTTCTGTTATCCTGTGTGGAATTGAGGGATTACCCTTGGGAGTTGAATGGAATGGAGGGTCTCTTTTCTAGAGGTTCTACATAGCTGTTCTGAGATTTTCTTTCATTCTGGTTCTTAAAGTGAGCTGTGCACAGACCCAGCCTTTCATAATTGTCTCTAG
Seq C2 exon
GTGTCCCCACCTCCCCGTGAGCAGAAACGGTCATGGGAGAAGATGTCACCCTCAGGAATGGCGGAGGAGTCCCTGAGCAGCCCGCAGCTAGAGTCTGTGGAGACCAGTCACAGATACGAGTCCTGGGGGCCCCTCTACATCCAAGAGACTGGTGAAGAGGAGAAGTTCACTCCCGCGCTGAGGAAGGTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030956:ENSBTAT00000022287:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.315 A=NA C2=0.908
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=75.8)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCACACCAAGGAGCAGA
R:
CCCCAGGACTCGTATCTGTGA
Band lengths:
298-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]