HsaINT0188821 @ hg19
Intron Retention
Gene
ENSG00000166529 | ZSCAN21
Description
zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:13104]
Coordinates
chr7:99654534-99655513:+
Coord C1 exon
chr7:99654534-99655028
Coord A exon
chr7:99655029-99655320
Coord C2 exon
chr7:99655321-99655513
Length
292 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CCATTCCTGATTGTCTCTAGGTC
3' ss Score
9.59
Exon sequences
Seq C1 exon
GTTTAACTTGTGGCCCTAAAGAACTGGAAACCCAAAGGAACGAATATTCCTGCCCCACAGAGTCCCATCTTTGGTGAGGCTGTTTCTGGAGTTTACATGATGACCAAGGTACTAGGCATGGCCCCAGTTCTGGGCCCTAGGCCTCCACAGGAGCAGGTGGGGCCTCTGATGGTAAAAGTCGAGGAGAAAGAAGAGAAAGGCAAGTACCTTCCTAGCCTGGAGATGTTCCGCCAGCGCTTCAGGCAGTTTGGGTACCATGATACCCCTGGACCCCGAGAGGCCCTGAGCCAACTCCGGGTGCTCTGCTGTGAGTGGCTGAGGCCCGAGATCCACACCAAGGAGCAGATCCTGGAGCTACTGGTGCTGGAGCAGTTCCTGACCATCCTGCCCCAGGAGCTCCAGGCCTGGGTGCAGGAGCATTGCCCGGAGAGCGCTGAAGAGGCTGTCACTCTCCTCGAAGATCTGGAGCGGGAACTGGATGAGCCAGGACACCAG
Seq A exon
GTAGGCAGGAGAGACCTTTGTTATTCTAGGAGATTGGGAGCGTAACATTCTAGGCAGGAACAAGGGTTTGTCCATACATTAAGATTTGCTGAATGGAAATTTCTGCTGAATTAGACCTTGTTTCCTCCTATTTTTCTCTATCATCCTAAACTAACTTTTAGCCTTGGGAATGGAATGGGATGGGTGTTTTCCTTTTCTCTTTCCTAGAGGTTCTATGTAGCTCTACTGGGATTTTCATTCTTGGTCTTAAAGTGAGCCATGCACAAACCTAGCCATTCCTGATTGTCTCTAG
Seq C2 exon
GTCTCAACTCCTCCAAACGAACAGAAACCGGTGTGGGAGAAGATATCCTCCTCAGGAACTGCAAAGGAATCCCCGAGCAGCATGCAGCCACAGCCCTTGGAGACCAGTCACAAATACGAGTCTTGGGGGCCCCTGTACATCCAAGAGTCTGGTGAGGAGCAGGAGTTCGCTCAAGATCCAAGAAAGGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166529-ZSCAN21:NM_145914:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.935
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(97.9=70.7),PF034808=SBP_bac_7=PU(68.8=41.4)
A:
NA
C2:
PF0202312=SCAN=PD(0.1=0.0),PF034808=SBP_bac_7=PD(28.8=47.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCACACCAAGGAGCAGA
R:
GGCCCCCAAGACTCGTATTTG
Band lengths:
301-593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)