DmeALTA0002480-2/2 @ dm6
Alternative 3'ss
Gene
FBgn0083956 | CG34120
Description
This gene is referred to in FlyBase by the symbol DmelCG34120 (FBgn0083956). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (4 unique). Gene sequence location is X:21123634..21140951. Its molecular function is described by: lipid transporter activity; ATPase activity; ATP binding; ATPase-coupled transmembrane transporter activity. It is involved in the biological process described with: lipid transport; transmembrane transport. 17 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed at stages throughout the pupal period, in adult male stages.
Coordinates
chrX:21135626-21136676:+
Coord C1 exon
chrX:21135626-21135963
Coord A exon
chrX:21136021-21136023
Coord C2 exon
chrX:21136024-21136676
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
ATATTATTTTTCGGATTTAGCAG
3' ss Score
6.47
Exon sequences
Seq C1 exon
TTATATGTGCACCAACTTTTTTAATTCGGCAAACATTGGTGCTGTGGCCTCCGCCCTTCTATTCTTCATTAGCCTTTGTCCCTTTATCATTGTGCTGATGTTCGATGCCAAATTGAGCGTTTTCGAGAGCTTCCTGGTGGACCTCTCCTTCACCACGGCCTTTGCCAAGGGCTGGGGCGAGTTGATTCGAATGGAGCTGCAGCAGGAGGGACTGACAGTACGTCATCTCATCCAGGTGGGTCCTGCGAGAAGTGAGTGTGCCATGGCGCTGCTCATGTTCCTTCTCGATTTACTGCTGTATGCGGTTATTGGACTGGCCTACCAGCGCTATAAGAAAA
Seq A exon
CAG
Seq C2 exon
ATAACTACAGCTTTGTGAAGGTCAGTCGCTCACAATTGGACGGCAAACTGGGCGCCTCGTTGGTTAATGTTAGCAAACTGTATGGCAGCAAGTGCGCTGTTTCAAACTTAAGCCTCGACTTTGCGCGCAACCAGGTGAGCTGTCTTCTGGGTCGAAATGGAGCTGGAAAGAGCACGCTGATCAAGTTGCTCACCGGACAAATCCGGCAGAGCAGTGGCAAGGTCCTGTTGGCCGGAGAGCACCAAGTGGGTGTCTGTTGGCAGGATAATATTCTAATACCCACGCTGACGGCTCGGGAGCACCTGCAGCTGTATGCACAGATCAAGATACCACCAGGTGGGAGTGGAGGTGTGGAGGAGATCCGCTCGGAGGTTGCCCAAACCCTCCAGAGTCTAAACTTTGGTAAGCACGAATCCTATCCTTCGTGGCAGCTGTCCGGGGGCTACAGACGACGCCTCTGCGTGGCCATAGCCTTCATTGCTTCGCCCAGTGTGGTCATC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0083956-16-13,16-12-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PD(43.3=93.0)
A:
NA
C2:
PF0000522=ABC_tran=WD(100=64.2)
Main Inclusion Isoform:
FBpp0309770
Main Skipping Isoform:
FBpp0110124
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0288866
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCATGTTCCTTCTCGA
R:
GCGACTGACCTTCACAAAGCT
Band lengths:
100-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)