DmeALTA0003236-1/2 @ dm6
Alternative 3'ss
Gene
FBgn0034137 | CG4945
Description
This gene is referred to in FlyBase by the symbol DmelCG4945 (FBgn0034137). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (3 unique). Gene sequence location is 2R:16566023..16570120. Its molecular function is described by: ATP binding; protein serine/threonine kinase activity. It is involved in the biological process described with: peptidyl-threonine phosphorylation; peptidyl-serine phosphorylation; mesoderm development. 8 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; fertile. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages, at stages throughout the pupal period, in stages of adults of both sexes.
Coordinates
chr2R:16569159-16570010:+
Coord C1 exon
chr2R:16569159-16569528
Coord A exon
NA
Coord C2 exon
chr2R:16569910-16570010
Length
0 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
3' ss Seq
TCTCCCATATGCTTCTCAAGTTA
3' ss Score
3.95
Exon sequences
Seq C1 exon
GAGGAGAACGAGGAGACCAATTCGGCATCCCCATCCTCGTCGGTCTCGCGCGAGCCGCTACCCGGGCATATATCGTCGCTGCGCAAGCCCACAAGTCCGGCGGAGAGCGCAAAGGAGATTAACAGCACCCTGAAGGACGCCACCCAAAAGCACTTCGATCCACGCACGGGTGCACTGCAGCAGGGACCCAGCGAGATGGGTCAGGTGGCCATGGCGTATTCCAAGTCGGCCAGTCCCGCCTCCAACTACAGCACCACAGCGTCCACGCTGAACAACGCGGACAGCCTAATGACACTGGGCTCGCGGCAGGATCTGCTGGCCAGCAACCTGACTATGTACACGTCCATGGAGACCGAATTGAATCGTCTAG
Seq A exon
NA
Seq C2 exon
TTAAAGACAGTGCCTACGGATCGGTCGATGTCAGCGAGATGGCGGTGGCGGCCAGCAGAAGTCCCTCGCTGATGAAGGACACCGCCTACGATCGCACCACC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0034137-7-13,7-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.882 A=NA C2=0.670
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0309068
Main Skipping Isoform:
FBpp0086245
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0086246, FBpp0086247
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCAGCAACCTGACTATG
R:
TCCTTCATCAGCGAGGGACTT
Band lengths:
134-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)