DmeALTA0003889-2/2 @ dm6
Alternative 3'ss
Gene
FBgn0033359 | CG8213
Description
NA
Coordinates
chr2R:8970865-8975444:-
Coord C1 exon
chr2R:8971425-8975444
Coord A exon
chr2R:8971052-8971249
Coord C2 exon
chr2R:8970865-8971051
Length
198 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
CGACTCATCCAAAAATATAGCAC
3' ss Score
0.88
Exon sequences
Seq C1 exon
GGTAGCCTCGCTGCAGGGTAACTTTGAGGCCCTGGCCGATATGATCGAAGAGCCGGGAAGCAACAAGACCGTGGCCACCTACCAAGCCGGAGCAGGAGGAACTGCCAAGCCTGTGAGAGTAGTAACCACACGGAAGCCTGTGAGGACAGCCACCACAACCAGGCCCAAGGTAACCACAAAGAAACCAGTCACCCGGGTCACGACAAAGGCTCCCAACAAGAAGACCTCCGCTGTCAGCACCACCACTCGCAAGCCCGCTACGCGTCGCACCACCGTTGCCGCAAAGGTAACCACCACCACTCGGAGACCGGCGACCAAGAAGCCAACTCGCAGGGTAAGCAGTACCGTGAAGACCACGACCGTTAGTTCGGCTAGACCGGCGGACGACGAGATCGTGGACGAGGAGGACGAAGAGGACGTTAACCCGAATCCCAGCGACAACGAGATTGACCAAGGAGCTACTTTGAGCTCGTACGGCGGAGCCAACGGTCGGAAGATTC
Seq A exon
CACGCCGCAAGCACAAGCGGCGTAATCAGAAGACCACCTAGACCAATTCCCATAAAGAAACCCCCTCCTAGTTCTAGTGCCCCTTTTCCACTCCCCCTCCACTCAATTGTCCCACCAGTTCTATGCTTCCCCAACTCTCAGACTCGACTTCTCGAACACTCCCCACTCCTAACCTCGCATTTCACTCCCCATCAACAG
Seq C2 exon
AGTGCGGTGTACGGCCCCATGTCAAGTCCGGCCGCATTGTCGGAGGCAAGGGCTCCACCTTCGGCGCCTACCCCTGGCAGGTCCTCGTCCGGGAGTCCACCTGGCTGGGCCTATTCACCAAGAACAAGTGCGGCGGCGTCCTAATCACCAGCCGCTACGTCATCACCGCCGCCCATTGTCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0033359-3-4,3-2-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=NA C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.0=79.4)
Main Inclusion Isoform:
FBpp0308413
Main Skipping Isoform:
FBpp0271893
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0271892
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGAGGACGTTAACCCGA
R:
GACGTAGCGGCTGGTGATTAG
Band lengths:
254-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)