DmeINT0015429 @ dm6
Intron Retention
Gene
FBgn0033359 | CG8213
Description
NA
Coordinates
chr2R:8970865-8975444:-
Coord C1 exon
chr2R:8971425-8975444
Coord A exon
chr2R:8971052-8971424
Coord C2 exon
chr2R:8970865-8971051
Length
373 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
3' ss Seq
ATTTCACTCCCCATCAACAGAGT
3' ss Score
7.08
Exon sequences
Seq C1 exon
GTGGTCGCAAGCTCTTTGGGGGCTATCGCATCACACCGAAGCACTGCCGTGCCACCAAGACGCTGCCCAGCTCGGATCCACGGGCCAATGGACCCACCATCTGCATGTTTAACCACGAGTGCGCACAGCGGGGTGGCGAGGTGGTGGGCGCCTGCATGGACGGCTTCCTCTTCGGCGCCTGCTGCCAGATCCCGCCCACCCACGAGTTGGCCAGCACGCTGATTAACGAGGCGCAGAACGCCTACTTCCAGCAGCACCAGCAGCAGACGAAGCTCCAGCAGTCAGCAGCCCAATCCTCGTTCGAAAGCTACGGCGAACAGCAACAGTCATTGAGCGAGGAGCAGGTGGCACAGCAGCCGTCGCAGAACATCTACGATCAGCAGAACCTGGACAAGGTGTACCAGCAACTGGACAGCAGCAGTAGCATCAGTCCACCCAACGGAGCCTACGGCGATGAGCCGCAGCAGCAGGAGTATCAGTCGGAGTCGGAGCAGCCCGTAAGGGATGAGAATGCGTATCCTACCAGCAGTTCATCCACCGAGGCCACTCAGTCGCAGTCCTCCTCCGCCAGTGTGGAATTTGAGCAGGAGCCCTCCCAACCAGCAGATGCCTCCAACGATCAGACCACTCAGAAGATCAACAAACAGCCCGTCCAGCCACCCAACTTCCACGTCCACAAGCACTCCGTAACCATCAACTCACCCTCTTCGCCGCCTCAAAACGATGACTTCGTAATGCAGGTGCTAAGCACCTTGCCACCTGAGCATGCGGATGACCATCATATTGTCTTTACCACCGAGGTGCCCACCAAGATCACCAGTGGATTGCAGGATCAAACGAGCTCTGAGTCCAACTCCTTCGAAGAGGTGTCTTCGACGCCAGCAGCCACCCAAAAACCGAAACCCAAGCCAACTCAAATGCCCACTCAGAAGACCACTCAGAAGGCCACGCAGAAGCCCACTCCAAAGCCCACACAGAAAGCCAAGCCGAAACCAGTTCCCCAACTGGCGGAGAGCATGAAGCGACCCATCCAACAGAAGCCACAGCAGGTGGCGAAACCTAAGCCAAGCCCTAAGCCTGCCCAGTCCACAAACAACCACCACCACAACCACTTGATCCTGGACGGTGGCGAGTTCACGCACAGTGACATCACCCACCCCGGAGCAGATGCCGATCTCGTGGAGGATCTGCAATTCTCCACTGGCTATGGCCCCCAACCTGTGTACGCAGAACCACCGAAGCAGCAACAGCAACAGCAACCTGCTGAGCAGAGCTACATTTCCTCCAGCACTAGTGCGAAACGTCCAACGACAGGTCATAATAGTCCCACCACTGTTTCGTCAATTACCACCCACGTAGACTCTATCGAGTCCATCATCCTGCAGCTAAACAATACCAGTCATGGTCCCAGCTATAATGTTGTGAGCCAGCAGACCCCATCATATGGATATCCTGGAGCAGCAGTGGTTCAGACTGAGCCAGCAGCCCAAAATCCGACCTTCTACCAGGAGAACGAGTCGGAGAAGGTCCAGGAGTCGGACTCGCAGTCTGATTACGGTTACACCACCACAGTTAACTACGAGTCTTTCTACGACAAGGTTTCAGATGAGCAGGATGCCTCCGCTGCTGTCAGTCAGTCTGCTGAGATGCCCACCGCACGTCCTGGATACGGAGAAGATGTTTCCGCTGTGCTGGAGGACCATACGATGCCGGCCAATGGTTACCACGATGCCGAGGCTCCAGTTGCTCCACAGACTTCGGAGTTTAACAAGATGCCAGTGATGGGCATTGCCTATCCAGTGGATATGTCTTATATGGAGGAGGAGGGAAATCTTCCGGCCACTGCAGCTGGTTATGGCCAGATGAGCAGTGACTCCTACGAGGCGAGCACTGAATCCACCTACCAGAAGTTGTCAACGGTCCAAACGGAGGAGCCGCAGCCAACTTACGTGCGCCCCACAACCAATGCCAATAAGCAGAATCGCCCAGTGGCCTCCTACATTGGAATGGTGACAATGCAGCACTATAACCCGCAGCCCGGAAATGGTGACTACCAGGCTCAAGTGCCCCCCGAAGTATCCGTGTCCTCGCACACCACCAAAGTCCAGGAGCAGATGGATGAGACCTCGAATGGCTATCAGCAATCGGAGACCACTTCTGGCTATGTTTCGCCACCAACTGCTGTTCCTGCGCCAGCACAGCGGCCTCAGTATGACGCTGTCCAGGGTGATGCTTCCTCGGAGCGACCTGTCCTGGTGACGGCCAGTCCCAGGCCCCGACCCAAGCCCAGTACCAAGCGACCTGCCGTGAAGAGACCCATCAGCGGCGAGAGCACCAAGAAGAAACCTCAGCCACAGCCAAGTGCCGGTGCCTACAACCAAGAGAAGATCAGCGAACATAGCACAAGAAAGCCAGTGTCCAATGGATACGATAAGGTACCCGAGTCGCCCATCACACACATTCAGATTAAGAAGCCATCGGCAACTCAACACAAGGAACAAGAGCAGACGGGATACCCCAGACCTGCCAGCCCTGCGGGATACGAACAGACAACTGCCGCAGCTCCTGCGCCAGCTGCTCCTTCTCTCAACTACGACAAGCCGGATGCTCCTCCCAGCCAGTACGACCAGCCCTCGGCTCCATCCGCAAGTTACGATCAGTTGGCGCCGATGCCGTCTCTCAACTACAACGAGCAGCACGCTAGTTCACCAGGAAGGAAGCCGTCAACGGCCAAGCCCATTTCCACCAGCTATGTGACCGGACCCAGTACCCCACGACCCCCAGCCACCGTTGATTACCACTATGACAATGTGCCACCACTGTTCATGGCGGACGACAAGCTGGATGCCTTCATCCAGAGCACTGCGGAGAACATTGTCGGATCAACCCCGGGCAACTATCAGCCTCCGCTGGTGGCTACCGCATCGACGCCCGCTTACGCCCATAGACCAACCAGCAGTGGTAGCTATGGCCATAAGAAGCCTGGCTTCGTCCAGATCAATGGAACACCCAAACCTCCCAGACCGACGGTGCTCATTACGCCCAAGCCCACTGCCATAAATCTTGTGACCTACAGCTCTTTGAGCGACGATAGCAACAAGCTGGCCTCCAGCACAAGTTCTTATGTGACCGGAAGACCGGGAGTACAGGGAGTAAGTTCCAACGACTTCAAGGATCCCGGATACTTTGGCAGTAGCCCCGTCCATGTGGCATTCACGCAATCCACCACAGAGGCCGTCTACGCAGTGCCCTCCGATGACAAGCCAGCATTCCCAGGATACTTCGGGCCAACGCCCTCGTATCCCGCCTTCTCAGTTCCCGGCGAGAAAGTGGGCCAGAATGTTATGGAGGAAACCTACACGTCGCCCAATGATTTCGTCAACTTCCCGCCGGTAAGGAACCCCAATCTGAACATGTCGGCTGCCTCCAGCGCAGTGACCAGCGATCTCGACCTCTCCACACCCGCCTTTGTGGAGGATGTGGTGCTCAAGGACAAGATGCACACCCTGGTTCACAAATTGGTAGCCTCGCTGCAGGGTAACTTTGAGGCCCTGGCCGATATGATCGAAGAGCCGGGAAGCAACAAGACCGTGGCCACCTACCAAGCCGGAGCAGGAGGAACTGCCAAGCCTGTGAGAGTAGTAACCACACGGAAGCCTGTGAGGACAGCCACCACAACCAGGCCCAAGGTAACCACAAAGAAACCAGTCACCCGGGTCACGACAAAGGCTCCCAACAAGAAGACCTCCGCTGTCAGCACCACCACTCGCAAGCCCGCTACGCGTCGCACCACCGTTGCCGCAAAGGTAACCACCACCACTCGGAGACCGGCGACCAAGAAGCCAACTCGCAGGGTAAGCAGTACCGTGAAGACCACGACCGTTAGTTCGGCTAGACCGGCGGACGACGAGATCGTGGACGAGGAGGACGAAGAGGACGTTAACCCGAATCCCAGCGACAACGAGATTGACCAAGGAGCTACTTTGAGCTCGTACGGCGGAGCCAACGGTCGGAAGATTC
Seq A exon
GTAAGTGTGGACTGAATGTAGCATGGACTAGCATGGACCCGAAACAACTGTCTTTCTCTCTCTATTTCTTGTTCTCTCACCTGCCCTTCACCTGTTCCTAATCGCTCGCGCATCTAACTCACCGCACCCTCAATCCTAATCCTCCATTGTATTTCCGACTCATCCAAAAATATAGCACGCCGCAAGCACAAGCGGCGTAATCAGAAGACCACCTAGACCAATTCCCATAAAGAAACCCCCTCCTAGTTCTAGTGCCCCTTTTCCACTCCCCCTCCACTCAATTGTCCCACCAGTTCTATGCTTCCCCAACTCTCAGACTCGACTTCTCGAACACTCCCCACTCCTAACCTCGCATTTCACTCCCCATCAACAG
Seq C2 exon
AGTGCGGTGTACGGCCCCATGTCAAGTCCGGCCGCATTGTCGGAGGCAAGGGCTCCACCTTCGGCGCCTACCCCTGGCAGGTCCTCGTCCGGGAGTCCACCTGGCTGGGCCTATTCACCAAGAACAAGTGCGGCGGCGTCCTAATCACCAGCCGCTACGTCATCACCGCCGCCCATTGTCAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0033359:FBtr0273384:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.835 A=NA C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0008921=Trypsin=PU(21.0=79.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0271892
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCAACTCGCAGGGTAAG
R:
GACGTAGCGGCTGGTGATTAG
Band lengths:
343-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)