DmeALTA0004508-2/2 @ dm6
Alternative 3'ss
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11199594-11203544:-
Coord C1 exon
chr2L:11203309-11203544
Coord A exon
chr2L:11199711-11199794
Coord C2 exon
chr2L:11199594-11199710
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TATTTGCCTCTTAATCACAGAAA
3' ss Score
5.27
Exon sequences
Seq C1 exon
GATTGCCGTGTGTGTTTGTGTCTGTGTCAGTGCCAAGTGCCCAATTGCCCAAGTGTCTGTGTGTGTGGTGGTGCAAGTGCCCGTGTGTTTGTGAAAGCCAGGATTGCAGTGCTCCAGCTCCCGAGGAGCGAAATTGCGGAGCCTGGCGAAAAGTGAATGGCTAAAGCAGGGCCCATGCTGATGCACAGATGCCCTGATCCTGCGATCCTGCGATCCCGCGTCTGGTCAGTGCTAAA
Seq A exon
AAAGTGTTCAAGTGGAATACCCAATCGTGAATATATATGCTAATTAAATATATATAAATTCGTGTAATGATCGGCATCGTATAG
Seq C2 exon
TGTGAAAGTTTCATGTTGGACCCGATCTCCTCCAAGTGAGAATTACGTCAGTCCGCCAAAAAGAGATGAGAATCTTCTAGCCAGGTTACAATCGAGCCAATAACCAGCGACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822-1-1,1-0-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCCAGGATTGCAGTGCTC
R:
CTCACTTGGAGGAGATCGGGT
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)