DmeALTD0004219-3/3 @ dm6
Alternative 5'ss
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11199594-11203421:-
Coord C1 exon
chr2L:11203321-11203421
Coord A exon
chr2L:11203251-11203320
Coord C2 exon
chr2L:11199594-11199794
Length
70 bp
Sequences
Splice sites
5' ss Seq
GTGGTAGGC
5' ss Score
5.59
3' ss Seq
TATTTGCCTCTTAATCACAGAAA
3' ss Score
5.27
Exon sequences
Seq C1 exon
AGGAGCGAAATTGCGGAGCCTGGCGAAAAGTGAATGGCTAAAGCAGGGCCCATGCTGATGCACAGATGCCCTGATCCTGCGATCCTGCGATCCCGCGTCTG
Seq A exon
GTCAGTGCTAAAGTGAGTGTGTGAAAGTGATATCAAGATATATTCTCACATCCTGACACGGTGATAAGTG
Seq C2 exon
AAAGTGTTCAAGTGGAATACCCAATCGTGAATATATATGCTAATTAAATATATATAAATTCGTGTAATGATCGGCATCGTATAGTGTGAAAGTTTCATGTTGGACCCGATCTCCTCCAAGTGAGAATTACGTCAGTCCGCCAAAAAGAGATGAGAATCTTCTAGCCAGGTTACAATCGAGCCAATAACCAGCGACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCCTGGCGAAAAGTGAAT
R:
ACGATGCCGATCATTACACGA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)