DmeALTA0008925-2/3 @ dm6
Alternative 3'ss
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16527277-16533096:-
Coord C1 exon
chrX:16533059-16533096
Coord A exon
chrX:16527784-16527899
Coord C2 exon
chrX:16527277-16527783
Length
116 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACG
5' ss Score
6.95
3' ss Seq
TAAATAATAAATTGAAACAGCTC
3' ss Score
2.55
Exon sequences
Seq C1 exon
GACAGTTTCAGTAAACCACGGAGACGAACGGATTACGG
Seq A exon
CTCTGGGAACAAAACGCAACGTTTGATGAAAATTTCTGGCAACACGTCTTGGTTGTTGTTAAGCACGCAAAAAAATTAAATAAAAAAACCAATTCAAATACCCAATGATAATGCAG
Seq C2 exon
ATTTAACAAACAAAACCAAAACAAATAAAAGCAAACAAAAATACAAATATAAAAAAAAAACCAAACAAAAAAACCAAAAAACAAAACAAACAACAAATTCATCTTCTACTTGTTCTACCGCTTCAACTTTATTCGTCTTCGTCTCCGTAATATATATATATATATAAAATATACATATATATATATTTATATATATATATATCTATGTATATGTATGCATATGTGTGTGAGTGCGTCGCGTGTGTGTTGGTGCCTGTAAATGTGTGAGCCACAACAACAACAACTACAACAACAGCAGCAGCAGCCAGAGCCACAACCACAACAACAACAACAGTAGTTAACAGCAGCAACAATTCTTAGCAGCAGCAGCAACAACAACAATACAAGCAAGCACGCTCACAACAAAAGCAGCAACAGCAACAACAACCACAATAGCAACTACAGCAACAACAACATCAGCGGATAGAGCGAGCAGCCAGGCACAACATCGATAGACATCG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-0-4,0-3,0-2-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTCAGTAAACCACGGAGAC
R:
CTCACACACATATGCATACATATACA
Band lengths:
266-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)