DmeALTA0008927-2/2 @ dm6
Alternative 3'ss
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16489600-16492515:-
Coord C1 exon
chrX:16492447-16492515
Coord A exon
chrX:16489854-16489877
Coord C2 exon
chrX:16489600-16489853
Length
24 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
CAAATTTTTGTATGGTTCAGTCT
3' ss Score
4.76
Exon sequences
Seq C1 exon
ATGTGATGGTCCTGAATGACATCATCGAACAGGCCGCTGGTCGGCACAGTCGGGCAAGCGATCGCGGTG
Seq A exon
TCTCCGTTTACTATTTCCCAACAG
Seq C2 exon
AGGACGATGACGAGGATGGGCCGACGTTCAAAGACAAGGCACTCGAAGTGATCCTCAAAGGCATCGATGTGTTTTGTGTGTGGGACTGTTGCTGGGTTTGGTTGAAATTTCAGGAGTGGGTATCGCTCATCGTCTTCGATCCCTTCGTCGAGCTCTTCATCACGCTGTGCATTGTGGTCAACACGATGTTCATGGCAATGGATCACCACGATATGAACAAGGAGATGGAACGCGTGCTCAAGAGTGGCAACTAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-24-25,24-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.127 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(1.6=3.5)
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
FBpp0292692
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292679, FBpp0292681, FBpp0292683, FBpp0292686, FBpp0292688, FBpp0292689, FBpp0292694, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292709, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292716, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292723, FBpp0309614, FBpp0311217
Other Skipping Isoforms:
FBpp0288560, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292680, FBpp0292682, FBpp0292684, FBpp0292685, FBpp0292687, FBpp0292690, FBpp0292691, FBpp0292693, FBpp0292695, FBpp0292708, FBpp0292710, FBpp0292715, FBpp0292717, FBpp0292722, FBpp0292724
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACATCATCGAACAGGCCG
R:
TGCCTTTGAGGATCACTTCGA
Band lengths:
117-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)