DmeALTD0001025-4/4 @ dm6
Alternative 5'ss
Gene
FBgn0033368 | CG13743
Description
This gene is referred to in FlyBase by the symbol DmelCG13743 (FBgn0033368). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:9044850..9060608. Its molecular function is described by: amino acid transmembrane transporter activity. It is involved in the biological process described with: amino acid transmembrane transport. 8 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: lethal - all die before end of pupal stage; some die during pupal stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.
Coordinates
chr2R:9059255-9059907:-
Coord C1 exon
chr2R:9059853-9059907
Coord A exon
chr2R:9059606-9059852
Coord C2 exon
chr2R:9059255-9059548
Length
247 bp
Sequences
Splice sites
5' ss Seq
TTTGTATTT
5' ss Score
-7.18
3' ss Seq
ATTTGCTTATATGCTTGCAGGCG
3' ss Score
7.94
Exon sequences
Seq C1 exon
CAGTCTCATCGAAAGCGTCGAAGCAACCGAATCGCATCGAACATCCGACAAATCG
Seq A exon
GTTAGCCGATGCAAAACTCCATTGAGAAATGCACAGCATAAAAAAATTCAAAATAACAAAAAACCCGAATAGGAAACTAACGAATTCTTACACAACATTCCAAACTAGATAACTAGATAATAATCCCGTGCTCGTTTCGTTTGTTTGCCGTTCAGTGACAGTGCTAGAAAGTGATGTGCTCCAGTTCTTGTATAACTCTTCATAATTAACAAGAAAACTAAAACTGTGTTGTGCCTGCGGCCAATTT
Seq C2 exon
GCGGATGCTGGTACACATATTTATTCAGCTACTGCTTATGGCCAGCCAACTACCCACCTAAACTAAACCGAAACCAGAGCTAAAACTAAACTGAAAACGAAATCAAAACCAAAACTAACTAAACGAACTGAACTATAAAGAAGCCAGTGGCTGTTACAACTTTCACTACTAGCAAAGTTGGACCAAAGGCAAAAGGCAAAAGCAGAAGCAACCCGACCAAGCAACATGAACATGAACATGAACGACAGTCGACGCAACACCGCCACGGAATTCAGCTATATCCTGCAGCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0033368-2-2,3-2,4-2,5-2-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.978
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF046958=Pex14_N=PU(16.5=82.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAACCGAATCGCATCGAA
R:
TTGCGTCGACTGTCGTTCATG
Band lengths:
292-539
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)