DmeALTD0004137-1/2 @ dm6
Alternative 5'ss
Gene
FBgn0265937 | CR44724
Description
The gene antisense RNA:CR44724 is referred to in FlyBase by the symbol DmelasRNA:CR44724 (CR44724, FBgn0265937). It is a non_protein_coding_gene from Dmel. It has 2 annotated transcripts. Gene sequence location is 2R:21297495..21298495. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported.
Coordinates
chr2R:21297495-21298363:-
Coord C1 exon
chr2R:21298263-21298363
Coord A exon
NA
Coord C2 exon
chr2R:21297495-21298192
Length
0 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
CATTTGCGTTTCGCCTTAAGATT
3' ss Score
6.12
Exon sequences
Seq C1 exon
AGCGAATCCGGATTCAGGGGTGACATCTCCGAGTAGGCACGGCCCACCAGCTGAAGTTTGGGCGTGCGCCGCATGGTTATGGCAATTACAAACGGTTAATG
Seq A exon
NA
Seq C2 exon
ATTCACACAAAACTGGGCATCTTCGGGAGGAATCGGGTGATTTATACGATCAACATATATTATATTCAGTTTGTCTAGGCAAATTAGCGAATGCCGCGATTGCAATCTATTTCAAATATTATGGAAAACACAGCGATTACGATTAGAGGAGCGCACGCGGCGCGCTCTGCTGGAAAACTGAATGGAATTGGAAGCAAAACCGCTGGCGCAGAAAGAGAATCGTCAATCGCTCTCCTGGCTCTCCTTTGTTTTATTTTGCCTTATATTCTTTTTTTTTTTGATAAAACCAAAAACAGTAACCCCAAAAACAGGGGTGTTTATCAAACTAGGCGTGTGTGTTCCCAGTCCAGACACACACGTGATGCGCGAATGTGGGGCTGTCGCAATGAAAACAAACGCGAAAAGCCAACGAACTACCAGAACTACCGAAGCCATCGATACCCTTGAAAATTAATAGGTCTGTCGAGGTTTTACTAGACAAGAACTCATTCATGGCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0265937-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATCTCCGAGTAGGCACG
R:
CCCGAAGATGCCCAGTTTTGT
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)