DmeALTD0004220-3/3 @ dm6
Alternative 5'ss
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11163453-11165678:-
Coord C1 exon
chr2L:11165603-11165678
Coord A exon
chr2L:11165564-11165602
Coord C2 exon
chr2L:11163453-11163949
Length
39 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGA
5' ss Score
6.69
3' ss Seq
GCCATGATACTAACGCTCAGGTG
3' ss Score
2.69
Exon sequences
Seq C1 exon
AACCAAACCAGACCCTCAAGACTGTATGGCACAAAGGGCTCGTCGAGCGGGAATCTTGGTGCGGGCGGACAAGCAG
Seq A exon
GTGCGGAGCCATCTCGAGGTAGCACACCCCCCACACCTG
Seq C2 exon
GTGACGAATCAGATTCCATGGGACCAGGACGACACGGCAAGACACCGGCGGCGGCGGCCAACAAGGAGAAGCGAAAGCCATTCTTCAAGAAACAGGAGACGGCCAGTCCCTACGACGTGGTGCCCTCGATGCGTCCCGTCGTCCTGGTGGGGCCCAGTTTGAAGGGCTACGAGGTGACCGACATGATGCAGAAAGCCCTCTTCGACTTCCTCAAGCACCGCTTCGAGGGCCGCATCATCATCACCCGGGTGATGGCCGACATCTCGCTGGCCAAGCGCTCCATCATGAACAATCCCTCGAAGCGGGCCATCATGGAGCGATCCTCCAGCCGGAGCGACTGCCTCGGCAAGGTGCAGGAGGAGATCGAGCGCATCTTCGAGCTGGCCCGCTCGCTCCAGCTGGTCGTGCTCGATTGTGATACAATCAATCATCCGTCACAACTAGCGAAAACTTCATTAGCGCCAACAATAGTGTACTTAAAGATTAGTAGTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822-10-11,11-11,12-11-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.249
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0062516=Guanylate_kin=PU(67.6=75.9)
Main Inclusion Isoform:
FBpp0301962
Main Skipping Isoform:
FBpp0297478
Other Inclusion Isoforms:
FBpp0301964, FBpp0310211
Other Skipping Isoforms:
FBpp0289392, FBpp0289763, FBpp0301963, FBpp0310210, FBpp0310212
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGTCGAGCGGGAATCTTG
R:
TTTCGCTTCTCCTTGTTGGCC
Band lengths:
114-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)