DmeEX0003621 @ dm6
Exon Skipping
Gene
FBgn0259822 | Ca-beta
Description
NA
Coordinates
chr2L:11163453-11165678:-
Coord C1 exon
chr2L:11165564-11165678
Coord A exon
chr2L:11164720-11164755
Coord C2 exon
chr2L:11163453-11163949
Length
36 bp
Sequences
Splice sites
3' ss Seq
CAACCACAACGCGACCCAAGATC
3' ss Score
-2.23
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AACCAAACCAGACCCTCAAGACTGTATGGCACAAAGGGCTCGTCGAGCGGGAATCTTGGTGCGGGCGGACAAGCAGGTGCGGAGCCATCTCGAGGTAGCACACCCCCCACACCTG
Seq A exon
ATCCCTACAGTACAACACCGCGCAAGAAAAACAAAG
Seq C2 exon
GTGACGAATCAGATTCCATGGGACCAGGACGACACGGCAAGACACCGGCGGCGGCGGCCAACAAGGAGAAGCGAAAGCCATTCTTCAAGAAACAGGAGACGGCCAGTCCCTACGACGTGGTGCCCTCGATGCGTCCCGTCGTCCTGGTGGGGCCCAGTTTGAAGGGCTACGAGGTGACCGACATGATGCAGAAAGCCCTCTTCGACTTCCTCAAGCACCGCTTCGAGGGCCGCATCATCATCACCCGGGTGATGGCCGACATCTCGCTGGCCAAGCGCTCCATCATGAACAATCCCTCGAAGCGGGCCATCATGGAGCGATCCTCCAGCCGGAGCGACTGCCTCGGCAAGGTGCAGGAGGAGATCGAGCGCATCTTCGAGCTGGCCCGCTCGCTCCAGCTGGTCGTGCTCGATTGTGATACAATCAATCATCCGTCACAACTAGCGAAAACTTCATTAGCGCCAACAATAGTGTACTTAAAGATTAGTAGTAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0259822_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.249
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062516=Guanylate_kin=PU(67.6=75.9)
Main Inclusion Isoform:
FBtr0310279fB424
Main Skipping Isoform:
FBpp0301962
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0289392, FBpp0289763, FBpp0297478, FBpp0301963, FBpp0301964, FBpp0310210, FBpp0310211, FBpp0310212
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCATCTCGAGGTAGCACA
R:
TGGCTTTCGCTTCTCCTTGTT
Band lengths:
114-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)