DmeALTD0004656-2/2 @ dm6
Alternative 5'ss
Gene
FBgn0265296 | Dscam2
Description
The gene Down syndrome cell adhesion molecule 2 is referred to in FlyBase by the symbol DmelDscam2 (CG42256, FBgn0265296). It is a protein_coding_gene from Dmel. It has 16 annotated transcripts and 16 polypeptides (15 unique). Gene sequence location is 3L:7159199..7189931. Its molecular function is described by: cell-cell adhesion mediator activity; identical protein binding. It is involved in the biological process described with: homophilic cell adhesion via plasma membrane adhesion molecules; neuron projection morphogenesis; dendrite self-avoidance; axon guidance. 26 alleles are reported. The phenotypes of these alleles manifest in: adult external mesothorax; mesothoracic segment; thoracic segment; adult mesothoracic segment; dorsal mesothorax. The phenotypic classes of alleles include: neuroanatomy defective; size defective; viable; partially lethal - majority die; body color defective.
Coordinates
chr3L:7163752-7164513:-
Coord C1 exon
chr3L:7164350-7164513
Coord A exon
chr3L:7164248-7164349
Coord C2 exon
chr3L:7163752-7163878
Length
102 bp
Sequences
Splice sites
5' ss Seq
ATCGTGCGT
5' ss Score
6.05
3' ss Seq
GTTCCATGTTCCATGTGCAGTCC
3' ss Score
7.72
Exon sequences
Seq C1 exon
AAACCTCCGAGGACATCTCGCCGTATGCCACCTTCCAGCTGTCGGAGGCTGGGGGCAACATGTCGCAGCCGCACCACGGCGGTCCGGCCAACACGCTGCTCCACTCGTTCATGTACCACGAGCGGGCCCTGGCCGAGGGCTGCTCGTCGCCACCACCAGCCGCG
Seq A exon
GTACTGAACCCACCAACAACCACCACCCATCACCACCACCACCACCAACGTCCACTAAAGACAATTCATAATTATTATCAGACCTCACCGTTCCATAATATC
Seq C2 exon
TCCAAGAATCGGAGGCGCCACTCCAGGAAGACGGAGCCGGAGAGCGAGGAGTCGGAATCGGACCAGGACCAGCTCACCTCCAGTCGCACCGAGTCCTCCAACCAGCACGAGGGCAAGATTAAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0265296-22-21,23-21-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
FBpp0288826
Main Skipping Isoform:
FBpp0303367
Other Inclusion Isoforms:
FBpp0288827
Other Skipping Isoforms:
FBpp0288823, FBpp0288824, FBpp0288825, FBpp0291333, FBpp0291334, FBpp0303368, FBpp0303369, FBpp0308278, FBpp0308279, FBpp0312398
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATGCCACCTTCCAGCTGTC
R:
CTCGTGCTGGTTGGAGGACTC
Band lengths:
253-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)