DmeALTD0006635-1/2 @ dm6
Alternative 5'ss
Gene
FBgn0003319 | Sb
Description
The gene Stubble is referred to in FlyBase by the symbol DmelSb (CG4316, FBgn0003319). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 3R:16116161..16145284. Its molecular function is described by: serine-type endopeptidase activity. It is involved in the biological process described with: cytoskeleton organization; actin filament bundle assembly; proteolysis; wing disc development. 63 alleles are reported. The phenotypes of these alleles manifest in: chaeta; embryonic/larval cuticle; ventral thoracic disc; macrochaeta; adult sense organ. The phenotypic classes of alleles include: increased mortality during development; lethal - all die before end of pupal stage; lethal - all die before end of prepupal stage; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed during late pupal stages.
Coordinates
chr3R:16128726-16132944:+
Coord C1 exon
chr3R:16128726-16128880
Coord A exon
NA
Coord C2 exon
chr3R:16132227-16132944
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCT
5' ss Score
5.39
3' ss Seq
ACTTCTGTTTTGTTTTGCAGCCC
3' ss Score
11.52
Exon sequences
Seq C1 exon
CGCAGTTTGGTTTTCACAGCGCTCGAGTGCGGTTCAGATCGGTTTCCGATTCGGATTCGGTTTCGATTTCGCTGTTTGCTGTTCGCTTTTCGGTTCGCACACTTGCAGCTCCATTCTATATGGGAAAAAAAACACAAGAAGAAATTCACGAAAAG
Seq A exon
NA
Seq C2 exon
CCCACAATACATACGCCCACGACTGAAGAAAGGCAGTGAAATAAAAAGAAATCAACCGAAACAAAAGTGAAAAACAATAAAGGCCACGGAAAATCACGGTGCAATAAAAGCTTAACTCAATACCAAGAGAAAAAATATTTTCAATTCGAGACGTCGCTATAAAGAAAACAAATAAAGCTCGAAAAAAAATAAAGGCCTCAGTAACAATTAATTAAGAGTGTGGTGCAGCTATAACAATAACAAAAAACTAGCTCACATGTATTTACAAAAGAGTTTTACGACTTCGCAGTGAAATGCAAATCAATTAAACATCATATTTATTGTTAAAACAAAAAGAAAAAAGGAACAACAAGTTAAAAACGAAAAGAAATTTTCGTTACAATTTGATTTGCCATTACCCGAGGATTTGATGTGTTTTATTGACCATGAAAACGATGGAAAGTCCGCGACTCTAAAAAATACATATTTAAAAATAATTAACGAGAATTCCCCAACTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0003319-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGGTTTTCACAGCGCTCGA
R:
AGCGACGTCTCGAATTGAAAA
Band lengths:
308-571
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)