DmeALTD0008980-4/7 @ dm6
Alternative 5'ss
Gene
FBgn0041096 | rols
Description
The gene rolling pebbles is referred to in FlyBase by the symbol Dmel
ols (CG32096, FBgn0041096). It is a protein_coding_gene from Dmel. It has 10 annotated transcripts and 10 polypeptides (7 unique). Gene sequence location is 3L:12008225..12064859. Its molecular function is described by: cell adhesion molecule binding; structural constituent of muscle; protein binding. It is involved in the biological process described with: myoblast fusion; border follicle cell migration; anterior Malpighian tubule development; sarcomere organization. 49 alleles are reported. The phenotypes of these alleles manifest in: larva; dorsal closure embryo; embryonic/larval digestive system; nervous system; somatic muscle primordium. The phenotypic classes of alleles include: increased mortality during development; phenotype; fertile; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 06-18 hour embryonic stages, at stages throughout the pupal period.
Coordinates
chr3L:12055194-12056474:-
Coord C1 exon
chr3L:12056301-12056474
Coord A exon
chr3L:12056230-12056300
Coord C2 exon
chr3L:12055194-12055708
Length
71 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATA
5' ss Score
0.92
3' ss Seq
GTTTTTCTCGTTTTGTAAAGCGC
3' ss Score
5.99
Exon sequences
Seq C1 exon
GCTCAGTTTCGAAACGAACTTCAAAGCTCGCGCAAGCGTACCGCACGCGAATCGGAAAACGCATTCTACGATCGGCAAATCATCGCGATACACGATCTTTCTTCAGCCGGCATTTTCTTGTTCGCCACTCTGGATACGGTTTCAAATCGCAAAACGTGCCAAGTTCCTTAAAAA
Seq A exon
GTGTGCGAAAATTGCAAATATTTTGAGTTTCCATGTGACGTATGCGTAATGTGACCACAGTGCGGATTAAA
Seq C2 exon
CGCTCTTTAGATGTATTTCGAAAACGAATTTAACGAATAGGTGTAAAGGAAAAATCCACAAAAGTACGTGCCACCAAAAAGTGCAAAAGAAGGGCAAATCGAACGAGAAATTCGGCTCGAAAAGCTGGACAAAATCGACTTGAAAGGATTCGCAGCTGGAACTGCATCCATCCAGATACAGATCCAGATACATGTGTATATACCGTATACCAGTGCCGATACAGATACAGATACATACATACATGAGGCAGCCTGCGAACCACAAAAGATACATGCCATGTTCCCACTAACCAACCGCTCTTCGAGTGGCAATCGCACCAACAACAATCCGAGCAACAACAACAACAACCAGACCACAAGCTTCATAATCGGAGGTACCACCAATATTAACAACAACAACAATCAGCTTGGTGGCACAAACAGCGCTAAGGATAAAGGAAATTTTGAAAATAATTGGAGCTGCAATAAAACAACCGGTCGTCGATCTGGCAGTGGAAATA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0041096-2-3,3-3,4-3,5-3,6-3,7-3,8-3-4/7
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.637
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATCTTTCTTCAGCCGGCAT
R:
TTTGCACTTTTTGGTGGCACG
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)