DmeEX0001964 @ dm6
Exon Skipping
Gene
FBgn0083956 | CG34120
Description
This gene is referred to in FlyBase by the symbol DmelCG34120 (FBgn0083956). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (4 unique). Gene sequence location is X:21123634..21140951. Its molecular function is described by: lipid transporter activity; ATPase activity; ATP binding; ATPase-coupled transmembrane transporter activity. It is involved in the biological process described with: lipid transport; transmembrane transport. 17 alleles are reported. No phenotypic data is available. The phenotypic class of alleles includes: viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed at stages throughout the pupal period, in adult male stages.
Coordinates
chrX:21133328-21133953:+
Coord C1 exon
chrX:21133328-21133468
Coord A exon
chrX:21133548-21133595
Coord C2 exon
chrX:21133814-21133953
Length
48 bp
Sequences
Splice sites
3' ss Seq
CAACCTTGCTCTGCCTCCAGCCC
3' ss Score
7.59
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
Exon sequences
Seq C1 exon
ATCGCGAAACCTTCGTGAAGTTGGGCGTTCTTTTGTGTGGTCATCCGTTTCCCAATACCGATACTATACCGTTGGTCAATGAAATCCTGGAATCCGAGGACTTTAGCCAGGCCAACGATGCAGAGATCGATGCAATGCCCA
Seq A exon
CCCGTCGTCGTCGTCGATACGAAGATCTTCCCACGGACTGGAGGCCAA
Seq C2 exon
CTAAATACTGCAAACGCCTCTACCGGGATGTGACTTCTACGAACCAAGGCAAACTCACCTGGAACACCATCAAGCCGATTATCCAGGGACGGATCTTGTATACCCCTGCCAATGCTATGACAGAAAGCGTGGTGAAGTTT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0083956_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=0.289 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0309770
Main Skipping Isoform:
FBpp0288866
Other Inclusion Isoforms:
FBpp0110123, FBpp0110124
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACTTTAGCCAGGCCAAC
R:
CGTCCCTGGATAATCGGCTTG
Band lengths:
137-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)