DmeEX0003572 @ dm6
Exon Skipping
Gene
FBgn0266622 | CR45129
Description
The gene antisense RNA:CR45129 is referred to in FlyBase by the symbol DmelasRNA:CR45129 (CR45129, FBgn0266622). It is a non_protein_coding_gene from Dmel. It has 3 annotated transcripts. Gene sequence location is 2R:7325896..7335195. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. No phenotypic class data is available.
Coordinates
chr2R:7325896-7333910:+
Coord C1 exon
chr2R:7325896-7326076
Coord A exon
chr2R:7333522-7333639
Coord C2 exon
chr2R:7333696-7333910
Length
118 bp
Sequences
Splice sites
3' ss Seq
TATATTTACACAAACTATAGTAT
3' ss Score
1.11
5' ss Seq
AAAGTAATT
5' ss Score
3.64
Exon sequences
Seq C1 exon
AAATTTATCGACATGTTGGCTAAACTGTTTTTTTTTTTTTAATACTTAACGTAAAATTAGTTAATTGGATGCAAAATATTATCTTTGTAAATGAAAGGATAATAATTGGTGAATAGAAAGGATACCAACATTTAGCCAACATGATGCAAAACAGAAATAAGATATCGATCTACGGTCTACG
Seq A exon
TATAGTATAGACCTCGTTCGACTTGGTTCAACTTGGTCTTTGGCCTACGGATGTGGAATATGGATAGATTCAGAGAAGTCGAGAAAAACTGGATTAGCTGCAGCAAGAGGAGTCAAAA
Seq C2 exon
TTAGCCTGGTCCGGCGTTCTGCCACGCCCACCTGGTTGATCGCCCGACAACTGTAGTTCCCCGCATGCCCCTCCCCCGCCCTGTTGATCAGCAGTAGGCTGGTGTGTTCGCCAACTGTGGCCTGAGTGACGTCATCGTTGCCATCATCGTGCACCTGACGCCCATCTAGCCACCATTCGAACATAATGGGCGTGGACCCCCGGCTGGCAATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0266622-'0-2,'0-1,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAACATGATGCAAAACAGA
R:
GTCCACGCCCATTATGTTCGA
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)