DmeEX0006357 @ dm6
Exon Skipping
Gene
FBgn0003319 | Sb
Description
The gene Stubble is referred to in FlyBase by the symbol DmelSb (CG4316, FBgn0003319). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is 3R:16116161..16145284. Its molecular function is described by: serine-type endopeptidase activity. It is involved in the biological process described with: cytoskeleton organization; actin filament bundle assembly; proteolysis; wing disc development. 63 alleles are reported. The phenotypes of these alleles manifest in: chaeta; embryonic/larval cuticle; ventral thoracic disc; macrochaeta; adult sense organ. The phenotypic classes of alleles include: increased mortality during development; lethal - all die before end of pupal stage; lethal - all die before end of prepupal stage; lethal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed during late pupal stages.
Coordinates
chr3R:16139825-16141572:+
Coord C1 exon
chr3R:16139825-16139887
Coord A exon
chr3R:16140583-16141182
Coord C2 exon
chr3R:16141379-16141572
Length
600 bp
Sequences
Splice sites
3' ss Seq
GTCATGCCCGTTCCTTGCAGAAG
3' ss Score
8.61
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ACATGCGCCCGGCACGTTACCGATGAAGCAGCCAACTTTAATCAGACCCAGACTCAGACACAG
Seq A exon
AAGAAGCACACCAGCGGCAGCCACCAAGATGTGTCCCAAAAGGCATTGGCTAGTCAACAACAGAGCAGCGGGATCGCGAGGATCAGGAGGAGCTGCGGCGCGGAGCAGGCGCAGTCTAGACCAAATAGTAGAAGTATTAGTAGCCTTAATCGTAGTCAATTGCCTGGCCACAGCAGCAGCGGCGCTGATCACACCGCCCGACAGCCTCGAGTCACTGGGCTCCCTGGGAATCCCGTCATCTTCCGCCTCCTCCTCCGAGGACGACGATGACATGAGTAGCGGCTTCTACCGCATCCCGCACCGCCTGGAGGGCTATCCGCAGTTGCAGCAACTGCAGCGCGGCCAGAACTTCAAGATCAGCCCCAAGCCATGCTCCTTTGGCCGCGTCGAGGGCACCTGCATGTTCGTGTGGGAGTGCATCAAGTCCGAGGGCAAGCACGTGGGCATGTGCGTCGACTCCTTCATGTTCGGCTCCTGCTGCACGCACAACTACACCGACAACATTGTCCTGCCCCAGACGGCCTTCTCCTACACGAGGCCCACCAAGCCGCTCACGCTCCGCCCGCGACCGCCGGCAGCGCCCTACAAGCCGATGATCAG
Seq C2 exon
CGGCATGACCACCATCGAGAGGCCTCATGGCGCTGGCACCCTTGTGATTCGTCCTTCGGGTCCGCACCACCAGGGCACTCTGGCCCGCCCGCATCCGCCGCCCTACCAGAGCAAGCCCACCACTGCCTCGGATCTGCATGGCTCAGCCTCGCATCCCAGCTCCAGTTCCAGCTCCAGCTCTAGTTCGAATCCCA
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0003319_MULTIEX1-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.269 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
FBpp0082704

Main Skipping Isoform:
NA
Other Inclusion Isoforms:
FBpp0310459
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTTACCGATGAAGCAG
R:
TGGGATTCGAACTAGAGCTGGA
Band lengths:
247-847
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)