DmeEX0006504 @ dm6
Exon Skipping
Gene
FBgn0035815 | Snmp2
Description
The gene Sensory neuron membrane protein 2 is referred to in FlyBase by the symbol DmelSnmp2 (CG7422, FBgn0035815). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (2 unique). Gene sequence location is 3L:7733250..7743041. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: viable; pain response defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, in adult male stages.
Coordinates
chr3L:7736609-7738482:-
Coord C1 exon
chr3L:7738335-7738482
Coord A exon
chr3L:7738107-7738244
Coord C2 exon
chr3L:7736609-7736869
Length
138 bp
Sequences
Splice sites
3' ss Seq
TCTTAATAATGAATTTGCAGGCA
3' ss Score
5.21
5' ss Seq
AAAGTAATT
5' ss Score
3.64
Exon sequences
Seq C1 exon
ACAATTCCGCCAGAAGAAAGTGAAGCACTTTTCGAGAGATGGATCGAAAATTTCCTATGTGCAAAATGTGCATTTCGATTTCGATGCTGTTGCCTCAGCTCCATATACCCAAGATGATCGAATTGTGGCTCTCAATATGCACATGAAT
Seq A exon
GCATTTTTACAAGTATTCGAAAGGGAAATCACAGATATCTTTCAGGGATTTGCCAATAGGCTTAACTCTCGATTGAATCAAACGCCAGGCGTACGAGTCCTGAAACGATTGATGGAACGTATTCGAGGGAAACGTAAA
Seq C2 exon
TCTGTGCTGCAGATCTCTGAGAATGATCCTGGACTGGCTTTATTGCTAGTCCACTTGAATGCGAATCTGAAGGCTGTCTTCAACGATCCAAGATCGATGTTTGTGAGCACTTCTGTAAGGGAATATCTTTTCGATGGAGTACGATTCTGTATCAATCCGCAAGGAATCGCCAAGGCAATTTGTAACCAGATCAAGGAAAGTGGATCGAAAACAATCAGGGAGAAGAGCGATGGCAGCTTGGCATTCTCATTCTTCGGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0035815_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0113016=CD36=FE(10.0=100)
A:
PF0113016=CD36=PD(21.8=80.4)
C2:
PF0113016=CD36=FE(17.5=100)
Main Inclusion Isoform:
FBpp0290423
Main Skipping Isoform:
FBpp0110185
Other Inclusion Isoforms:
FBpp0306711
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGATTTCGATGCTGTTGCCT
R:
GGCGATTCCTTGCGGATTGAT
Band lengths:
245-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)