DmeEX0007126 @ dm6
Exon Skipping
Gene
FBgn0250789 | alpha-Spec
Description
The gene alpha Spectrin is referred to in FlyBase by the symbol Dmelalpha-Spec (CG1977, FBgn0250789). It is a protein_coding_gene from Dmel. It has 5 annotated transcripts and 5 polypeptides (4 unique). Gene sequence location is 3L:1778485..1795328. Its molecular function is described by: microtubule binding; actin binding; calcium ion binding. It is involved in the biological process described with 12 unique terms, many of which group under: synapse organization; cell communication; membrane organization; microtubule-based process; cellular component maintenance. 56 alleles are reported. The phenotypes of these alleles manifest in: plasma membrane region; secretory vesicle; midline crossing tract; anterior-posterior subdivision of organism; postsynaptic membrane. The phenotypic classes of alleles include: phenotype; increased mortality; lethal - all die before end of larval stage; some die during larval stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 06-24 hour embryonic stages, during early larval stages.
Coordinates
chr3L:1789017-1795328:-
Coord C1 exon
chr3L:1795199-1795328
Coord A exon
chr3L:1789354-1793500
Coord C2 exon
chr3L:1789017-1789101
Length
4147 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCTTCCGTTGCAGGGA
3' ss Score
12.23
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
ATCGGCCGACATATTGAAAAAAACTGCGGTCCCGTGAAATAGAGGCGCTCCGTGAAAATTACGAATAACTACTGCAAATCAATAGTTAAATTAACAAAGTAACTGTGAACAAATAGATTGCCATCAAAGT
Seq A exon
GGAAACAAAAGGGAGAGAGGGATTGGAGGAGGGCCAAAGGTTGAAAATAGCTCGAGCTAAGGCACAGAAAATAGATCACCGGAACATGACTGCAGAGCTCAAAGCGTCAGATACAGAAATGACGAAGCCGGAAGAGAGGCATCTGCTGCAGCTGCTTGCGCAACTGGAGAAGGTGCCGCACCACCAGCTGGAGCAAAAGTTCGTCGCCTATTTTAAAAAGGTTGGCAAGGGTGATAACCAGAGTAACTGCACACTAGAGGACTTCGCCACCTACTTTTTAGGTGCACTGCGTCAAAGCACAAAGAGGTACTACTATTCGCAAAACTCGGAGACACCCGTGTTTCCCTTGACCCCCATCCATCAGCTCAAGCCGCCGGTCGCCGATGTGGTCAAGGAGGAGGAACAGCAGCAGCTCAATGAGTCCTCGATCCTTAGCCGGAGCAGCTGCAGTATGTCCTCCACTTCGAATACTACTCCGGCTCCCCAGCAGCCGCAGGGCAGAAGATCAACGCCAGGAAGTGGCGCCCAGTTTTGCAGCACGCCTAACAGAAGCGGCGGTGGGGGAGCAGGAGGAGGGCACAGCATCTGCTTGGGCAACTTTCTGGTCAATACACCTATCCAGAGCCATCAGCGATCTAAGAAGAAGATCACGCCCCAAAAACAGCAGCAAAATCAACATGCATCATTGGGTTCAGGAACTGGAGCTGGAGCCACGCCACAATCCAAGCCGCGGCGACGTGTCTTACCCATGACCATTAGCAAGAATGTTTCGGCCAGCTCCTCTTTCGGAGACACCAGTTCCTTTAGCAATGAAAATAACTTTTGGCGAATCTCGCAGAGCAGCGAAATCTTCGATAGAAGCCAAGAAGCAGCCCTGGAAATGGAGGCCCGCAAGTTCCTGTTGCTCAAAAAGCAGGAAATCAAAAGCGAAGCGCCTGTGAATGTTAGTCAACAGGAGAGGACACCCGAAGATGAGGTTTTCCCTGAGGAAGCCATTAGCTTGGAGGGTGTGGCTAATGCCAATCACTTGCAGCTCCTATCAACCATTTACAGCCTGTTAATGGACCTCAATTTGGTGCCCAACGTACTACGTGAACTTAGTTTTGTGGTCCATCTGCTAAATGTGCGAGATTTTGGCCAATCACCCGTCAAATCGTATGTACCCAGTGCTTTGGAGGGACTCACCCAGCACAAAAGTTGTGTATACTTTGCCGCAAAACTGCTGGAGAATCAGAAAAAGTTACTTCTGCAGCTTGACAAACGGACTTTGAGTGTCTTGCTACAAAACGAGAGATTGAGCCTGCTGCCGCAAGGAGTTGTCCAAGAATTGGAAACTCACTGTCAGCGGAGGCAGGATTCGACCACACCCTTCGCTATGGACACCTCTTCGTCCTCCCAGCAGAATGTATACTATCACGTGGAGAACGACTCGCGGGATAACTTTCCTTCGCAGAATGAGTTCGGGGCCTTCAAGTCCCAAAGGGACCTCTTTTACAAAGCCCTTAAGCGTTGGGAGGTGAGCCATCTGAATCGGGGTTTCAACTTTCCCAGCGAACTGGGGCCGCGTATTATGGATATCTATAAGAAATCGGAGCACCCAGTTAACATGACGCACCTGGCAAAATTATTTGTCAACCAATTATTGATCTCCGCTACCGAGACCACCGAATCTCCCGAAGAACTGGGCTTAAAGCTGGATCCCCTCAGGCACAATAAGCTGGCACAGCGCTTGGTGACATCCAGTTCCAGTGTGGAAGGTCAGTTTCCTCGCTCTCAGGCCTTCTTCCGCGACTTTATCGCCGTATGCTCATCGGTAGCATTTCTGGTGCACCTGAAGCTGGAGCTCTTTGTGCAACTAATGCGTAACAACGACTCCACCTTTGATCTGCTCCAGCTAACTGACGATGTGGCTGTCGAGGAGCAGTCCGCTCAGCAGGGACCATACATTGTTCGCGTCCAGACCATGGCTAACATGCTTATCCTGGCCAAGTTCTTGGGCTACGTAACTGTGATGCCCTTTAGCGGCACCACGCAACATGGAAACCCAACGCCGCCATATCTTTGTCCACAGCAGTTGCAGCTTCGTAACCATTTTCGTCCGGACTTCAATCTCCGCGAGATACTCGAACGTTCCATGCGCCAGGGCAAGCTGCTGATTACGCTTCCGTGGTTAGTTCAATACCTGGCGATGCTCGACTTGGTCAGCCTGCACCTTCCGGACGCAGTGGCCACTTTGGAGCTGCTGTACGGATTGTATGCCGACATACGTATGGCAAAATTGCAACCAGCAGCTGTGTTCATAGCCAGGAGCTGCATTGGATGGCTTTTGGATGCACAGCCGCAGTTGGTTAATGGCTACTACAATTACAGGGCACAGGAAGCCGGAGTCGGAAGCATTTCGGCAATTGTGGATATCTGCCTAAAGGACCTCTCGTGTCACGATAAATCGCACGCCCCCTTGTTGGACGAACTTCTGCCCGTGGCTTGCCCTTTCCTGCAGGAATTCCGGGTGAGCATCACGCCCTCTAGGCAAGCGAAAAGTGGGCGGTTCCGGTACATAACCACTCGGTTGGAGCAGTTGCAGCAGAACAGCAGTTCCATTTCCAAGGACGCGATAGTGGCAAGCGAACTGAGTCCCGCGGAGCAGCAGCAGCGCAAATTGGTCGATGCCTATCTCCAATCCCAAAACGCGTCCACCAGGAGGTTGATCGAGTTCGTCACGGAGCGCACTTTTAAGTGTGTCGTTAAGGACGCCCAGCAGGAGATTCTGCTCCCGTCGAAGGCCTCCGCGGATGCCAAAGTCAACGAAATTAAATCCACGATGCTCGAGGAGGTGTTTCAGGAGCTGCATGAGATCTTTCAAGATGCCAGGGAGAATGCGTGTCAGCGTTGGAAGGAGCATGTGCACCAAATGCTGGACAGGCGCATAGAGCACTCCTTGGATGGCCTTCTGCCCTCCAGCACCAATGCGGTATTGCGGTCTACATATGCTCATTTAATCCGGGTGCAAGCCCAGACTCAGCTGCAACAGTGGCTCCAGTCGAGCGTGCTTCAGTCCACATTTTATCATGGCGACCTTCAGGAGTTAGCCACCAAAGTGTGCAACTGCAATAGGAACAAGGCAGATGCAGCAGCTGCAGGTGGCGGCGGCTCCAGTGAGCTCCAGCTCAGTCCGGATATTGGATTCAGCCTGTCGGAGTTTCTCTATCAGCTCCAGCAGTGGTTGCACTGCCTCAGCTTGCGGCCAGAATATGTGGGCAGTCAAGAAGATCTGGCCGAGCTGCTTCGAAAAGCCCAAAAGGCGGTCCTGTTGCCTAAAATGCCCACTGTTTTCTATCACCTCATTGGGTCTGGATTAGTTCATTTGCTTCAGTTGCTCATTACCAGAAAACCGAATTTCCTCGACAAGGATATAATTTCAGCCAGCTGTTCGGTGTGGCGATCACAGCAGCTTATGGACAGTAAAGCTTCACCCGGAATCTTTGACGGCTTGATCAGCATTAGTTTTGTGCAGGAGATGGCAAACAGTGCGGACAGCTTTCGGATGCTGGAGACGATCCTTAGATCCATGCTACAGTCTGGAGCTATACGGGCCGATCATCTCAACGAACTCTTCATGCCGCTCTTTGCCGAGAACTGGTCGCCGAAAGTGTGGTGCATGCTTTCCGAACTTCTGCAGCAACTCTCTCTGTCCGGAAAGGATTCCGAAGCCCATTACGCCTCTGGCGATAGTCCCGAAGACGAGGCCAAGTCGCATCTCTTCATGGAGATGCTGGCCGACTTATCGCGGGATCTGGATAACTTTTAAGTTTAAAACTGTTGGTTATGTCATTTAACGTTTATGTTTCGAATAAAGTGTTCCCTTTTTGTATGTGTCTGCTGGAAATGGAATGGAAACGGGGTCCACGCTATGTACCCGATAAGATAGCGTTAGCTGATGGAACCTAATCAGCGCGAGAATGCGTCACATTCGCGCTTTTAGTTTGGTTAGTGTGTGCGAACACTGAGGCCACCATAAGGGGACGAGGTTGTCGATCGATGTGATCATCGACCTGAGCAACAGTCGACAAGCAAGTGGAAATTCCATATGAGAATTCTACGATTGTTGCCAAGCCAGTCAAAAAGTTAAAATAGTTTACAGAAGGAG
Seq C2 exon
TTGGGCACGGTCAAACATTTGATGAAGGGTTAGCAGCAGCAGCAGTATTAAATTAAAAACAATCCAGCGCCCAGAGCAACTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0250789_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)