DmeEX0009011 @ dm6
Exon Skipping
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16486718-16489516:-
Coord C1 exon
chrX:16489343-16489516
Coord A exon
chrX:16487883-16488045
Coord C2 exon
chrX:16486718-16486905
Length
163 bp
Sequences
Splice sites
3' ss Seq
AATCAATTCGCTAACTGCAGCTG
3' ss Score
4
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
TTCTTCACCGCCACCTTTGCCATCGAGGCCACCATGAAGCTAATGGCCATGAGCCCCAAGTACTATTTCCAGGAGGGCTGGAACATCTTCGACTTCATTATCGTGGCCCTATCGCTATTGGAACTGGGACTCGAGGGTGTCCAGGGTCTGTCCGTATTGCGTTCCTTTCGATTG
Seq A exon
CTGCGTGTATTCAAACTGGCCAAGTCTTGGCCCACACTTAATTTACTCATTTCGATTATGGGACGCACCATGGGCGCTTTGGGTAATCTGACATTTGTACTTTGCATTATCATCTTCATCTTTGCGGTGATGGGAATGCAACTGTTCGGAAAGAATTATCATG
Seq C2 exon
ATCACAAGGACCGCTTTCCGGATGGCGACCTGCCGCGCTGGAACTTCACCGACTTTATGCACAGCTTCATGATCGTGTTCCGGGTGCTCTGCGGAGAATGGATCGAGTCCATGTGGGACTGCATGTACGTGGGCGATGTCTCGTGCATTCCCTTCTTCTTGGCCACCGTTGTCATCGGCAATCTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255-'26-29,'26-28,28-29
Average complexity
ME(27_27-28_28[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(30.3=100)
A:
PF0052026=Ion_trans=FE(28.7=100)
C2:
PF0052026=Ion_trans=PD(22.2=75.0)
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
FBpp0292724
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0292672, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292694, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292721, FBpp0292723, FBpp0309614, FBpp0311217
Other Skipping Isoforms:
FBpp0110322, FBpp0288560, FBpp0292673, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292685, FBpp0292686, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292695, FBpp0292720, FBpp0292722
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCTGGAACATCTTCGACT
R:
GAGACATCGCCCACGTACATG
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)