DmeEX0009013 @ dm6
Exon Skipping
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16498716-16504298:-
Coord C1 exon
chrX:16503990-16504298
Coord A exon
chrX:16500507-16500569
Coord C2 exon
chrX:16498716-16498896
Length
63 bp
Sequences
Splice sites
3' ss Seq
GAAAATAAAACAAAACTTAGACA
3' ss Score
-2.88
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GAAGCGGAAGAAGCTGCCGCCGCCAAAGCGGCCAAGCTGGAGGAGCGGGCCAATGCGCAGGCTCAGGCAGCAGCGGATGCGGCTGCCGCCGAAGAGGCTGCACTGCATCCGGAAATGGCCAAGAGTCCGACGTATTCTTGCATCAGCTATGAGCTATTTGTTGGCGGCGAGAAGGGCAACGATGACAACAACAAAGAGAAGATGTCCATTCGGAGCGTCGAGGTGGAGTCGGAGTCGGTGAGCGTTATACAAAGACAACCAGCACCTACCACAGCACACCAAGCTACCAAAGTTCGTAAAGTGAGCACG
Seq A exon
ACATCCTTATCCTTACCTGGTTCACCGTTTAACATACGCAGGGGATCACGTAGTTCTCACAAG
Seq C2 exon
TACACGATACGGAACGGACGTGGCCGCTTTGGTATACCCGGTAGCGATCGTAAGCCATTGGTATTGTCAACATATCAGGATGCCCAGCAGCACTTGCCCTATGCCGACGACTCGAATGCCGTCACCCCGATGTCCGAAGAGAATGGGGCCATCATAGTGCCCGTGTACTATGGCAATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.845 C2=0.638
Domain overlap (PFAM):
C1:
PF119333=DUF3451=PU(96.8=58.3),PF119333=DUF3451=PU(1.9=2.9)
A:
PF119333=DUF3451=FE(8.4=100)
C2:
PF119333=DUF3451=PD(0.1=0.0),PF119333=DUF3451=FE(37.5=100)
Main Inclusion Isoform:
FBpp0303597
Main Skipping Isoform:
FBpp0292705
Other Inclusion Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292675, FBpp0292677, FBpp0292678, FBpp0292680, FBpp0292683, FBpp0292684, FBpp0292687, FBpp0292688, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292698, FBpp0292699, FBpp0292701, FBpp0292703, FBpp0292704, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292712, FBpp0292717, FBpp0292718, FBpp0292720, FBpp0292721, FBpp0292723, FBpp0292724, FBpp0309614, FBpp0311217
Other Skipping Isoforms:
FBpp0292674, FBpp0292676, FBpp0292679, FBpp0292681, FBpp0292682, FBpp0292685, FBpp0292686, FBpp0292689, FBpp0292690, FBpp0292697, FBpp0292700, FBpp0292702, FBpp0292709, FBpp0292710, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292719, FBpp0292722
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCAGCACCTACCACAG
R:
GCTGCTGGGCATCCTGATATG
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)