DmeEX0009848 @ dm6
Exon Skipping
Gene
FBgn0086899 | tlk
Description
NA
Coordinates
chrX:3749041-3783559:+
Coord C1 exon
chrX:3749041-3749094
Coord A exon
chrX:3762498-3762857
Coord C2 exon
chrX:3781655-3783559
Length
360 bp
Sequences
Splice sites
3' ss Seq
TGCAAAATTGGCAATTGCAGGCG
3' ss Score
3.43
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
CATCAATTCAGTTTCGGTTTCAGTCGCAATTCAAACGCCATCAAAATCAAAACG
Seq A exon
GCGCCCAGCTATCAACAACATTTTCATCATCAAAATCTTCACCACCACCAACAACAACATCAACAACAACAACAACAACAACATATAACGCAAGTGCAACAACAACAACAACAACAACAGCAACTTTTGGTATTGCCACAGCAGCAGCAACAGCAACATTTGCGAGTGTGCAACAATCAAATCAATAACAACAATAACAGCAGTAATAGCTGCCAAAACAGCTATCAATATAGTTATAACAATAATAATAACAACACCAACGCCAACAACAACAGCAATCAGCAGCTGCAACAACAAATTGTGAATAACAACAACAATCTCGAGGACGATGTGTATTATTTATTTTATAAAGATTTTTAT
Seq C2 exon
ATGTCCCCCGGCGCCCATTTGCAGATGTCCCCGCAGAACACTTCGTCCCTAAGTCAACACCATCCACATCAACAGCAACAGTTACAACCCCCACAGCAGCAACAACAGCATTTCCCTAACCATCACAGCGCCCAGCAACAGTCGCAGCAGCAGCAGCAACAGGAGCAACAGAATCCCCAGCAGCAGGCGCAACAGCAGCAGCAGATACTCCCACATCAACATTTGCAGCACCTGCACAAGCATCCGCATCAGCTGCAACTGCATCAGCAGCAGCAACAACAACTCCACCAGCAACAGCAGCAACACTTCCACCAGCAGTCGCTGCAAGGGCTGCATCAGGGTAGCAGCAATCCGGATTCGAATATGAGCACTGGCTCCTCGCATAGCGAGAAGGATGTCAATGATATGCTGAGTGGCGGTGCAGCAACGCCAGGAGCTGCAGCAGCAGCGATTCAACAGCAACATCCCGCCTTTGCGCCCACACTGGGAATGCAGCAACC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0086899-'8-20,'8-10,9-20
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.808 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF096065=Med15=PU(97.0=60.3)
Main Inclusion Isoform:
FBpp0111592
Main Skipping Isoform:
FBpp0288856
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCGCAATTCAAACGCCA
R:
GAAGTGTTGCTGCTGTTGCTG
Band lengths:
344-704
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)