DmeEX0009851 @ dm6
Exon Skipping
Gene
FBgn0086899 | tlk
Description
NA
Coordinates
chrX:3762498-3783559:+
Coord C1 exon
chrX:3762498-3762857
Coord A exon
chrX:3767675-3767744
Coord C2 exon
chrX:3781655-3783559
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTACCTTTCTTTACTTTCAGGTA
3' ss Score
13.16
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCGCCCAGCTATCAACAACATTTTCATCATCAAAATCTTCACCACCACCAACAACAACATCAACAACAACAACAACAACAACATATAACGCAAGTGCAACAACAACAACAACAACAACAGCAACTTTTGGTATTGCCACAGCAGCAGCAACAGCAACATTTGCGAGTGTGCAACAATCAAATCAATAACAACAATAACAGCAGTAATAGCTGCCAAAACAGCTATCAATATAGTTATAACAATAATAATAACAACACCAACGCCAACAACAACAGCAATCAGCAGCTGCAACAACAAATTGTGAATAACAACAACAATCTCGAGGACGATGTGTATTATTTATTTTATAAAGATTTTTAT
Seq A exon
GTAAGGATATAAAGAGTTTTCTTATTACTTGTGTCTTAATACTTTTTATGTAGAGATGTATCTGTCCTAT
Seq C2 exon
ATGTCCCCCGGCGCCCATTTGCAGATGTCCCCGCAGAACACTTCGTCCCTAAGTCAACACCATCCACATCAACAGCAACAGTTACAACCCCCACAGCAGCAACAACAGCATTTCCCTAACCATCACAGCGCCCAGCAACAGTCGCAGCAGCAGCAGCAACAGGAGCAACAGAATCCCCAGCAGCAGGCGCAACAGCAGCAGCAGATACTCCCACATCAACATTTGCAGCACCTGCACAAGCATCCGCATCAGCTGCAACTGCATCAGCAGCAGCAACAACAACTCCACCAGCAACAGCAGCAACACTTCCACCAGCAGTCGCTGCAAGGGCTGCATCAGGGTAGCAGCAATCCGGATTCGAATATGAGCACTGGCTCCTCGCATAGCGAGAAGGATGTCAATGATATGCTGAGTGGCGGTGCAGCAACGCCAGGAGCTGCAGCAGCAGCGATTCAACAGCAACATCCCGCCTTTGCGCCCACACTGGGAATGCAGCAACC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0086899_MULTIEX1-3/4=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.808 A=0.000 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF096065=Med15=PU(97.0=60.3)
Main Inclusion Isoform:
FBtr0112680fB1092
Main Skipping Isoform:
FBpp0111592
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATCAGCAGCTGCAACAAC
R:
TGTGGGGGTTGTAACTGTTGC
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)