DmeINT0010620 @ dm6
Intron Retention
Gene
FBgn0030421 | CG3812
Description
The gene 1-Acylglycerol-3-phosphate O-acyltransferase 1 is referred to in FlyBase by the symbol DmelAgpat1 (CG3812, FBgn0030421). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is X:12765266..12772851. Its molecular function is described by: 1-acylglycerol-3-phosphate O-acyltransferase activity. It is involved in the biological process described with: phosphatidic acid biosynthetic process. 9 alleles are reported. No phenotypic data is available. The phenotypic classes of alleles include: fertile; viable. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of very low expression. Peak expression observed within 00-12 hour embryonic stages.
Coordinates
chrX:12766969-12769824:+
Coord C1 exon
chrX:12766969-12767354
Coord A exon
chrX:12767355-12769690
Coord C2 exon
chrX:12769691-12769824
Length
2336 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TCTTATTTCTTTGTTTGTAGATG
3' ss Score
9.68
Exon sequences
Seq C1 exon
CGCATCGATCGGAACAACAAGGATATCCACACACAAACCACACACCTAAAAGACTGTAATCTGCCTTAACCATAGGAAAGTCAGAGAAAGAAAAGCCGGAAGTCCCATACAGGATAGCAAATCGGGCGAAGATAGCAGAAGGCATCTGGATCCAGGATCTGAAACGGTTGAATCACTAAGCATAAACATAATCAAATGATCACCATGACTTCGTTTATCGAACTGCTGGGACTTTTCTTGCTGCTGATGCTGCCATTCCTCTATGAGACCAATCACATATTCCGATACTACTTCAAATTCCTGATGTACTACGGCATCGTGTCGTTCAACTCGATCATCCTCATCCCGGCATTCCTCACCAGACCATGCGATGTCCGCAATCTGCT
Seq A exon
GTAAGTAGTGCAAAATATTTTTATGCAAATATCATGAAACACTAAACCAATCTGATATAAGAATAATAATACCTTTAGTTATCAAGTACAAGTATAGCTCAGTTAGAAGAGAACTCCCATATCTGTTTATTGAGTTCAGCATGTTTTGATTTAGCACTAATGGGCTGCCCATCTATATATCAATAAAGCACTCGAGTGGCTGATTGCCAATCAACAAATTGTAGACTCATCGATTAGTAATACAATACACAAAAGTATTTGCTAAAGTGTTTTCCATTATGCCTAACTATAAAACATAAAACTATATCGTATTTTAGTTACGACTTCGTTATAATGCTTATTTGGCTTCAAGTCTTTTTCTTTATCAAATCAAACATGCTTTCCAATGGTGATGATATCACCACGTTAATTACAAATTACAAAGTGCAAAATGATGCACTTTATCATGCTTACGAGTAACCTTGACCCAAATAAATCTTAATGTCATTCACTCTAAAAATTTTAATGGAATGATTTAATAACATTTGTAGGGAGCACTTAACTTCAACACCCATGATACCCCTTTTAAATTGCTTGCAAACCCAAAATAATGCCAAATGTCTATTCACTTTATGATGATTTTCCCATGCAAATTAATGAGCTTAATGAAACAATTTTCATCACACATCACGCCACCACAAGACAATCAAATTGGTGGTAAATAATGCATTATATTGGCTTGACGGGCAAATGGAGTAATTGCGGTATCACCAACTTAATTTCAACCGAAATAAAATTGCCTTATCATTGAAGACCGCAGGTGGGGCGTCCTTTTCGAAACGGTCTCCTTGAGTTCCCAAGGCGAATGCCTCAATGACACATACATTTGGCCATCAATATTAACAAGGGCCCAACTGCGGAGGAGTGACTGCAGGTGTCCGCAATGCACTTCTGGCCAACTGGCCAACTGGCCAACTGTCACTCAAGGACCCAGAAAGTCCAAAAGCCACAAATTGTTGTACACTTGAAGAATGCGAAAGAATGGTATAGTTTTTGTGTATGCAAAAAGCACCTTAGACACCTTAGAACTAGTTACTTTAAATTTATTTAATTTATTTAATTCTGATCAATCAATTTAGTTTAATTATGATCATTGCCAAAGTTGCAACATTATCTAAACTTTTTAATCTCCAAATCTCACAAATAGTTTAATATACGCTTAAATAAGTTAAAAGATATAGATTTATTGCTTCATAAACTTATGTTTATGATGTTTGCGTTACCAATTCCGGTATCGGAAATTGAATTTGTGACGAATTTCTTGCCAATTTGCCGTCGCGATAAGGTTTTTTTTTTTTATGGCATCCTCGCTGGTATTTGTGGCCCATGGTTGTTACCTCTAATGTGGCTAGCTGAATTGAAACACTTGAGAACTATAAATGTTAAAAAAAATACATACAAACAACAAAATGCAATGGGTATCGTACAGTTCTGATGTCGTAAAATTCGTAATTATATTTTCTTAGTGATTTGTGTTAGTGATTTTAAGTGAGGCCAGTGCTGCCTAGGGTCGTCAGTCCAAGGACGAAATTTTCGAGGGGAATTGAAACGGACTGTTGGGTTCTCGAGTTACCAGTTGGCTATGACGCCAATCTGGGAAAAAAAAGGGGTACTCTGTGGCGAAAGGGAGCAGTTGCACGCAAGTGGAAAAGCCAGGGAAAACCGAATTGTGTCCCCAATGCGGTGGGTTTTTTTTTTCATTTTTTTTTTTTTTACCATTTTGGTATGTGGTTAGTGGCAGCTGGTAGCTGGTAGCATTGCTCGCCACCTCGGCGATTTTGCGCGACTCAAATAACCATTTGCATTAGACAACAATGAATATTTGATATCAGGGGTGGATTACTACAAGTCCAACGTAGTCGCACACACAAATACCACTCACCTAAATCAATTATGCCTCTTGCCAACTCAACTATTTTATGCAGTTTATCGATCCATTTTCGGAGGCGCGAAATGAACGACGAGAATTCCTAGTAAACAGTGTGCACCCTCCTAGGGGTATAATTTATACAATTCCCGAGCTGTAATTACATGTCATGACTAGCTGGATTTAGTTGTAGTTCAGGTGGAATGGTTATCATCCCGGCGACAAGGTAAAAATCAGAGCTACGCCTCGATGGCTGTCAACTTGATTAAATAATGTTGCACTCACAATTGGCCGGTGGATTTGTTATGGTATATGGATTTCAGAAAATGACCGATCCCTCTTGGGCTCCGTATAATATAATCTCTATCGAAGAAATCACTGATTACAATGTTACTAATATATTTTCGATTTCTTATTTCTTTGTTTGTAG
Seq C2 exon
ATGGGCGAGCACCTGGTGCCACCGCGTTTCGACGTTGATTGGCCTGCGATGGGAGCTGCGCGGCAAGGAGCATTTGGCCAAGGACCAGGCCTGCATCATTGTGGCCAATCACCAAAGCTCGCTGGATGTGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0030421:FBtr0073688:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0155316=Acyltransferase=PU(22.1=63.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0073521
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0073522, FBpp0305378
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)