DmeINT0011509 @ dm6
Intron Retention
Gene
FBgn0261698 | CG42732
Description
The gene slowpoke 2 is referred to in FlyBase by the symbol DmelSLO2 (CG42732, FBgn0261698). It is a protein_coding_gene from Dmel. It has 10 annotated transcripts and 10 polypeptides (9 unique). Gene sequence location is 2R:10322195..10416996. Its molecular function is described by: calcium-activated potassium channel activity; outward rectifier potassium channel activity; intracellular sodium activated potassium channel activity. It is involved in the biological process described with: potassium ion transmembrane transport; potassium ion transport. 21 alleles are reported. The phenotypes of these alleles manifest in: mesothoracic tergum; ganglion mother cell; trichogen cell. The phenotypic classes of alleles include: phenotype; increased mortality; increased mortality during development; some die during P-stage.
Coordinates
chr2R:10332056-10333944:-
Coord C1 exon
chr2R:10333633-10333944
Coord A exon
chr2R:10332368-10333632
Coord C2 exon
chr2R:10332056-10332367
Length
1265 bp
Sequences
Splice sites
5' ss Seq
TGCGTGAGT
5' ss Score
7.55
3' ss Seq
TCCGCTTTGCCCCAATTTAGCTA
3' ss Score
6.72
Exon sequences
Seq C1 exon
CCAACCCAACAACAACAATAACAACAACAGTACAAGCAACAACAACAACAATTAGCACCACCTTCACATCATCAACATTACTATCAGCATCAACAACAACAGCAACAATAAATGCAACCTCAACCGCCGCAGCCGCACCACCACCAGTGCCGTCTGTTTGTGTGCGTGTGCCCCACAGTCCCAGTTACGATAGTGGTGGTGGCACCACCGGCACCACCCACTTGCAACCGTATCCGTATCCGCAATCGTATCCGCAACCGCATCCGCCAATGCAAACACCTGACAGTGGCGAGTTTGCATCACTATTTGTGC
Seq A exon
GTGAGTGTGACACCAGAACTACCGAAATCCCAAACGAAAGTAAAAAAGCCCGCAAGTCAAGAAAAAACCCGCATCTTTGGAATCCAAAAGAAAAGATACTACCAAAAAAAATGAAGCAAATCACAAATATTTCGTTCACGTTTTTTGCCTAACTCTATCACTCACCGAAAACCGATTCAACGTCCCCACATCCAAGCTACATATATCTTTCGCAGTTTTTCTCTTGCTGTCTCGATTTTGGAGCTTGAGCTGCCTTTAAACCCCATCCCATGTTACATTCTCCGCTACCCATGTCAAAGCACACATCCGGCGCCATCCAAGCCCATTTCTGCATTCCTTCCTCCCACAAACACCAGTCAAATAAAAAACCCATACATGAACACTAGGGTGGACCATTAAAAGGTGCCAGATGCACTGCAAAAGAAATCGTGTTTAACTTATACTTGAGTATATATCGAATATTCAAGCTTGACTGTAATTTACACGCGGTATTTGTTAATATTATTTGTTGAGAGACCGAGAGTCGTAATATAGAATTTTAAATAAAGGTCCACCCTAATGACCACACCCACGCTGGCCTCGCACTTTTTCCTCTTTTCTCCTTTTGCCACTATGCAAAACTATTTCTGTTGTTTGCTTCATTTTTTACATGGCTTCTTCTTCACGTTTCGTAGTTGTCTTTGCTCAAACATCACTTTTTCAACTTCCGCCCGTCATTTTCTTCTTCCGCCTGTCTTTGCACTTCGTTCTGTTTGCCAATGTTATTTGTGTGTGTGAGCATGAGCTTTGGATGTGTAGAACTGGCTGTAAATAATATGTACACCTCACGCAAACAATTCGTGTAAATTAGCTGCATAGAAATAGTCTAGCTTATTGTGCGTTCAAATTAGACCCGTCATCGTAGCTCACCCCTTTCCCACAGCCGCCCCTGTAATTAAGTAACCAAAAACTGTTGGCAGAAGGGGAAAGACAACATTTTGGCCAAGTTGCACCTTAATCACTTTGCCGAAAGTTTCCCGGCCAGTGCAAGCTTGTCGAGGACTTTTAACGAGTTGTTTTCCCAGGTTTGTCTTGTAGAATCTCCCCCCGATAAACCCGCTCCATTTGCCTTTTTGCCCTTTTCTCTGTCACATTTTTGTCGCTCAGCTGAAATTAGTGGACATTTTTATCCTGTATAGCAAGCGCCAAAGTAGTTGTAATTAGAATGGATACTGATCGTCATGTTGACCGGGACTAATTGCACTTTCCGCTTTGCCCCAATTTAG
Seq C2 exon
CTAGCGAAAATCCGACGGCTGTGATAATCTCGGACTCTAGGCAGAACCTCAAGGACACGACGGTGACCCAGACGGCGGCAACGATAACCACAACGACTCTGCCGCCACCGCCCCAGACGATGGGATCCCCCAGCATGGCGGGCGGATCGGGTGGATGTGGTGGAGGCGGCCTCGGCTTGGGCAGTGCCCACAGCATGGGCACCTCGCTCAGTATCACCCCAGCCACACTGACCACCACGGGCAATCACCTGGATGTGCCCTTTGCCAACAATCCCAACCTGCTCAGCCCAGATGTGCTCAACCAGCGGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261698:FBtr0303080:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.999
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0292199
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTATCCGCAATCGTATCCG
R:
CAAAGGGCACATCCAGGTGAT
Band lengths:
343-1608
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)