Special

DmeINT0019371 @ dm6

Intron Retention

Gene
Description
The gene Distal-less is referred to in FlyBase by the symbol DmelDll (CG3629, FBgn0000157). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:24814822..24835667. Its molecular function is described by: sequence-specific DNA binding; RNA polymerase II cis-regulatory region sequence-specific DNA binding; DNA-binding transcription factor activity. It is involved in the biological process described with 16 unique terms, many of which group under: organic substance biosynthetic process; positive regulation of biological process; nervous system development; central nervous system development; clypeo-labral disc development. 44 alleles are reported. The phenotypes of these alleles manifest in: lobe system of mushroom body; larval maxillary segment sense organ; macrochaeta; hindgut; female genitalia. The phenotypic classes of alleles include: phenotype; increased mortality; increased mortality during development; lethal - all die before end of larval stage. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-18 hour embryonic stages, during late larval stages, at stages throughout the pupal period.
Coordinates
chr2R:24833626-24834013:+
Coord C1 exon
chr2R:24833626-24833730
Coord A exon
chr2R:24833731-24833796
Coord C2 exon
chr2R:24833797-24834013
Length
66 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AGCTGCCTTTGTGCCCACAGAAT
3' ss Score
9.62
Exon sequences
Seq C1 exon
GCGGTAATAACGGCGGTGGCTCGAACAGCGGCTCACCCTCACATTATCTACCTCCCGGACACAGTCCAACGCCATCGAGTACACCCGTGTCCGAGCTTTCACCTG
Seq A exon
GTGAGTTTGCATGCGCGGAGGCCCAGCGTCAAGAAACCACTTCATCAGCTGCCTTTGTGCCCACAG
Seq C2 exon
AATTCCCACCAACGGGCCTCAGTCCGCCGACGCAAGCGCCGTGGGACCAGAAACCGCACTGGATCGACCACAAGCCGCCGCCCCAAATGACGCCACAACCACCTCATCCAGCGGCAACGCTACATCCGCAGACGCACCACCACAACCCGCCGCCCCAGATGGGTGGCTATGTGCCCCAGTACTGGTACCAGCCCGAGACGAATCCATCACTAGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0000157:FBtr0072379:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.932 A=NA C2=0.934
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
NO


Main Inclusion Isoform:
NA


Main Skipping Isoform:
FBpp0289353


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
FBpp0072285, FBpp0072286
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGCTCACCCTCACATTATC
R:
GAGGTGGTTGTGGCGTCATTT
Band lengths:
183-249
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)