DmeINT0021898 @ dm6
Intron Retention
Gene
FBgn0265042 | Irk1
Description
The gene Inwardly rectifying potassium channel 1 is referred to in FlyBase by the symbol DmelIrk1 (CG44159, FBgn0265042). It is a protein_coding_gene from Dmel. It has 8 annotated transcripts and 8 polypeptides (5 unique). Gene sequence location is 3R:23168317..23185642. Its molecular function is described by: inward rectifier potassium channel activity. It is involved in the biological process described with 6 unique terms, many of which group under: transport; regulation of membrane potential; inorganic ion transmembrane transport; developmental process; locomotory behavior. 19 alleles are reported. The phenotypes of these alleles manifest in: trichogen cell; wing; mesothoracic tergum; wing vein. The phenotypic classes of alleles include: lethal - all die during P-stage; visible; locomotor rhythm defective; viable; some die during pupal stage; partially lethal - majority die.
Coordinates
chr3R:23178617-23183060:+
Coord C1 exon
chr3R:23178617-23179173
Coord A exon
chr3R:23179174-23182945
Coord C2 exon
chr3R:23182946-23183060
Length
3772 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
ATCTTGTTGTTCCGTTTCAGGTA
3' ss Score
11.59
Exon sequences
Seq C1 exon
AAAAGTTGTTCGATCGCACAGTTCACACAACCGATACAAAACGTTAAAAAAAAACAAAAATAATAAGAACTATTCAACAAAAAGCGCAAAAGGCGTGAAATTCTACGCGCCATACAAGTTAATTAACCGGCTGAAAAGTGGCGCAATTTGAAAGTTTGACAAACGAGATCATTGCAACTCCATCGAAATGCTGAGATCTCGATTCTGTGATTTACTGGCCTCTTCGGCACGTCGTCGTCTTCTGCTGAAACATTGCCTGTGCTTTATTTTTATAACAATGACAAACTAGAGCAAGAGGAAACCCTTGATTGTGTTTTTTATATTCGCTTTAAAACAAAAAAAAAAAAGCAGAGCAATAGCACAGACTTTCGTACACTCAATTAATCGCAACCAACAGTATTGAATTGTTCGTTCGAACAAGTCTCGTGATCCCAGGACAATCCATCCATCAAAGGCCCCAAGATGTCTGAGCTGCGTCGCAGTTTAAGTCGACTCTCGATGATCGTCTACAGAGCCACCCATTCCAGCGAACAGTCGTGGCGGGAGGAGCTTCTCAG
Seq A exon
GTAAAATCCCAGTTGGACAAGATCGATCATCGAATCGGGGTATCAATCGAAAGATGATCATTTAACTGCTTGGAAGTGCTAATCAAAGTGAGCGTGAAATTCGGGAACACTGCGAGATCATTGATCTTCAAGCTATTACAGGATAGAATGGATTGTTGTACTGCTTATAGTTATTATTTGATTGATAATTAATTACTTATTCTATATCGATATTCTGGTACAATCCAGTTAGCACACCGGTTCTACAGATCCATAACATTACTTGGTTTTATAATGACTTACGTAGTCACCCTTGAAGGTTATTTAAACAGCTGAACTTGCCACGATCTCCGTACTATACATAAGAACATGTGTACAGCTGCATATAGATACAGATACATATGTATCTATACTATATATGCATCTGCGCAATCGAATCTATAATGTTTAATCGAATGCGGCATAAATATTTGCCTGAAAGGCGTTTCCATTCGATTCTTGCTAATGTATGCCCATAATATCCATTCTATATATGTATGTAGTTTCTGATCAAAGTTCACATAAAATGCAGAAAAGGATGTTCTGCGCGCCACAAATCCTTTGTTTTTTCCTCTTTGGTAAGCAATGTTCACGAATTTGCTGAGTGGCCAAATTGTCTGTTGACATCTTATGTATTTTTATATGCAAATTCATAATTATACTTTTCACTTTTGCCATTTGAAATTTGGCAAAGCGAATGAATTGCAGGTACAGTACGTTTTGCAAACGTAAATCATTGTCAAATAAATCTAACTACGTTATCGTAACGTAAAGCATTAAATAGATTAGTTGGAAAATTGAATCATCATTAGTTAAGAGGTTATTGGGGCTTCCGGAATTAGTTTGTTTTCAACACGACTTTTTACTACGAAACGTGCTGTAAATTTGTCTGGCTGTCTCAGCATGATTTATGTATAGCAATTGCAGTCAGTTGTCTGTGAATGTGCTTTATATACTATGAAGTACTCCACTGAATGCAATTCCTCTGGGCCATAAAGCGATCCAAGTCAGATCAATGACGTCAGCTGTTGTTGCTGAACGAGCTCAACAAATCGGTTTCGATTATGATCATGACCATGGTCAACTTATTTGCACCTTCGATATACATATAAAATTGCATTAGCAGATGGCCCAATTGCATTAGCCCGTCAAACAATTTGTTGGCCATTAGCCAGGTGATTGAACAACTATTTGAAATGCTATTTAAGTAACCCAAAATGGGCTTCACCTCCAGCCCTCCCACCTTTCGCCGAGTTCATCTTGTCCAAGGTTAGTTCTGTTTTGGTTGTTTTTTTTTGTTTCAATTGCCTCGATTAGCAGCTCACAGGCTGAGCTTTAATTGCGGGCCATAACCCAAGGAGCGCTTATCTGGCCTCCAGTTGTTTAGATTCCCCCTGAATATAATACAACTTTGATGGCTCGTCATTTTCCCACTCACTTCCCTATCTCGAAAATCTTAAATATGAGCTGATATCATGAGATACTTGACGCATATTAGTTCATATGCGTCGCCTGTTCCATTGAACTTGTTTTAATACACTTTACAGCCTGGTCGTCAACCGGTTATTGCATTTGGCAAACCAAAAATAAAAATCACAAAAAAATAGCGATTATAAACAAAATAATAACAATAACAATGGGGCACTCGGTCTGAGCCGGTTTATTTGCATGAGCAAAACATCAGATTTAAACTAACGAACTCTAATGGCACTGTTGTCACTCGGAGATTTCTACGAATTTTGGTTGAGTTTCACCTGGCAGGTATCATTGTTCTGAGAATTTCTCTCACATTTATGTTTTTATCGATTTCATTTATTTTTAATGAGGTTTGTACATGTTAAATCACTCACATTTCGATGACTCATCGCGACAACGTTTTTTGACTTCAATATGTGAACATTTAAGCAATCTAAAACATTCAAAATAATAAGTATTTGTTGTGTATATACAAACGTGTATTTGTGTGTAAACAAGACTATAGATATTATGTTTGTTATTGGTCATTTGAATGATTCAGATAGAGTTCTTATCAACACGATGAAAAAATATTAACTATCAGCTAATAGTAAGCACTGGTCATATTAGTAATTACAATTAGTAACGAAGTCAATAAAATAATAATCTTTGAAATATTTATGAGTCTTGTTTATAAACTAAAATATCATCATAATATTAGTTCAAATATTTAAGTTCAAAGTTTGTAACTTATGTTCATCTCAACAATATGACACTGTTTAGGTTTTTTTTTGTTTAAAAATAAAAATACGATTTACATACGCAAACAAATTGGTAATAATAGATGACATACAAATAACCATTCCGAAACCAATCGTCTCAACCAGCTCAATTAGTTTCCGATTCCATTGTGCCATTAGTTAGTCCCTCCTTATCGCCACCTCTCACCCTGGGAATTCAAATGGATTTTACCACCTCCGATCTACTCAAGCTCCACTTGGAACAATTGATAATCGCTTTAAAGCTCAGTTCCCCAAAGAGAGTGAGGAGATTTGCATGTATGTACTATGTACATATATTCTAGTGGATTTCAGTGCACAAAGCAAAAGCAGAGCGCGCTGATAAACTGAGTAAATGAAACGAATACGAAATATGTATAAATGGACATTGTGAATATCAAAGCAAAGGAAAGTGAAACGCAAACTGCAAAAGTCAGCTGCTTGGGGAAGAGTCCCTTACAGTTAGCGATTACTACAAAATACAGTTACAGCCAATCATCATCCCGAGCTCGCCAAATGGTCCACTCAGTACTAATTCGACTACGGTCTCTTAATAATCATTCCATGTGGATCCAGTGGATCCCTGGTACTCGTAGTATCAGCAGCAACTTATAAACCAAAAGTGCTCGGTCAAGTGATCGCGTTGATCTTGCGAATACCTGAAGTACTCGTAGTATCAGCAATTGATAATCGCCAATGTTTCCATGGTTATAACTAAAATCCTGCACAAATTCCAGGGTATTAAAAGTGATCGTCGTAACCCTGGTACCCGAAATCTCATCAATTGAATAATCGCCAAATGCTCCTCATGCTGTTCTTTTTTATCGGTCTAGTGTTTGTAGTGTGCTTCTCGAGCATATTGCTCCAAGCTATGATTTGGTAAATAAATCAGATATTCGCATAATATATTCGCACTACTGATAACTATATATTGTATTTGTATTATCGGTGAGAGAGACAAGCCTCAGTGGTTTTTTGTCTTTTGACTTCCTGTTGTTGCCATCCTTTATCAAAACCGAACAAAGGCCGGCTATAATGGACTGATATATGTAAATATGTGTGCATTGCACCCAATTCAGTTCAGTTCTTCTTCTTCTTATTGTTATAGAGGGTGTGTTCCACAATTAAAACATCCAGGGTTTTTATATCATTTTTCTTACATATTATCAAATTGTGGGTGCAAATGGAGACCTTAAGGCAGTTACTACGTTAAAAATAAGTGCTATTGACTATATAAAGAATACCTTACATTAAACCAATAGTGCCAAGTGCTCGATACGAAATTGTTCTCCAGTCCAAAAACAAGTGGATTCTTATCTAAACAGCAAATAGACTTGGTACGCAAATATAGCTTTTGTGAGCCCCTTTAAAGATTGTGTAAATGATAAGAGCCATCCATCCGCTACACTTGAAAGTGAAATGGCCAATCGAAGGCTTACCCAATAGATCATCCCTAGCATCTATTTCCGTGCCACACAAATGTGCCAATCTACAATGTACATCTTGTTGTTCCGTTTCAG
Seq C2 exon
GTACCGGCAGACACGTTTCAGTTCGCGGCGTGTTCGAAAACGTGTGGTCTTCAAGCACGGCGAGTGCAACGTTGTGCAGGGAAATGTGGCCAAGAGACGGCGTCGCTATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0265042:FBtr0336473:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0100715=IRK=PU(6.4=56.4)
Main Inclusion Isoform:
FBpp0307578
Main Skipping Isoform:
FBpp0307576
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)