DmeINT0030744 @ dm6
Intron Retention
Gene
FBgn0000346 | comt
Description
The gene comatose is referred to in FlyBase by the symbol Dmelcomt (CG1618, FBgn0000346). It is a protein_coding_gene from Dmel. It has 3 annotated transcripts and 3 polypeptides (1 unique). Gene sequence location is X:13259021..13262488. Its molecular function is described by: ATP binding; ATPase activity. It is involved in the biological process described with 14 unique terms, many of which group under: protein-containing complex subunit organization; regulation of neuromuscular synaptic transmission; Golgi organization; organelle localization by membrane tethering; homeostatic process. 53 alleles are reported. The phenotypes of these alleles manifest in: vesicle; cytoplasm; intracellular membrane-bounded organelle; multi-tissue structure; multi-cell-component structure. The phenotypic classes of alleles include: paralytic; behavior defective; phenotype; increased mortality. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in adult male stages.
Coordinates
chrX:13261505-13262488:+
Coord C1 exon
chrX:13261505-13261663
Coord A exon
chrX:13261664-13261731
Coord C2 exon
chrX:13261732-13262488
Length
68 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
TACCTATCCATTTCGACCAGCGT
3' ss Score
3.65
Exon sequences
Seq C1 exon
GGAGGTCCTGGAAGAGATGGAGATGCTGACGGCCTTCACCTCGGTGCTCCACGTGCCCAATCTTTCCAAGCCCGACCACGTTCTGGCCGTGCTGGAGAACACGGATATCTTTAGCAAGGGCGAAATCCAGGCGATTGGCAAGAAGATGGCCGGAAAACG
Seq A exon
GTAAGCTATATGATTCCAAAGAAAAAGTCCTATAAATATTTACTAATTTACCTATCCATTTCGACCAG
Seq C2 exon
CGTGTTTATTGGCATCAAGAAGCTGCTGGGTCTCATTGACATGGCTAGGCAAACGGAGCAATCACAGCGGGCCATAAAGTTCCTGTCCAAGATGGAAGAGGAGGGTGGTCTCGACATGGTGGCGCGGCAGTAAGGCATCTTAAACTGCATGTGCCCAAATGGAGTCTCAATTATTAGCTTCTAAGTGCTAAGGACGGGCGATGAATAGCGATGAAACCAAATCAGAATCTCAATGTACACGTACATATACACCGCTAAACATATACACAGATATATAGAGTTATATATATATATACGATCCAGGCTTCGCGATGTTTGTTCGGTCCCAAAGCCCAGATAAAAATCACAATCCACATCCCGGAGGAGTTTCGTGTGCTTCTGAGTTCCCCCACAGAGCTCAATCAAATCAGACAGATATGTGAGACCCGTGACCTGAAGATGATGGCATATAAATGACATAATATATGGCTTAAATGGACAGATACTCAATTACATTTATAAATAATTAACACGCGTAGCCACTAACTCGTTAAAGGCATGATAATCTTTCTCGTTACCTTTTAATTTTAGGACTTTTGCTTCAGTAAATTCTCAATAGGAAACGAAAAAACGGGAGAAAACACCAAAGTATTTGCCTTTGGGCATTGTGAACGTTGTTTATCGGTAACTAAACTAATTAAATATTTATTAAATCAAATATTGTTAACCGCCAATGTTATAATTATATCTTGAATAAAGTAAAACAAACTTAAATTCC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0000346:FBtr0073754:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF0000424=AAA=PD(15.3=37.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0073585

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0305521
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGATTGGCAAGAAGATGG
R:
TTAAGATGCCTTACTGCCGCG
Band lengths:
174-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)