DmeINT0031066 @ dm6
Intron Retention
Gene
FBgn0261397 | didum
Description
The gene dilute class unconventional myosin is referred to in FlyBase by the symbol Dmeldidum (CG2146, FBgn0261397). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 2R:7500147..7508625. Its molecular function is described by 8 unique terms, many of which group under: binding; protein binding; cytoskeletal protein binding; nucleoside-triphosphatase activity; catalytic activity. It is involved in the biological process described with 9 unique terms, many of which group under: organelle organization; establishment of protein localization; positive regulation of multicellular organismal process; cellular component organization or biogenesis; actin filament-based process. 24 alleles are reported. The phenotypes of these alleles manifest in: reproductive system; adult abdomen; male organism; plasma membrane bounded cell projection; peripheral nervous system. The phenotypic classes of alleles include: lethal - all die before end of embryonic stage; increased mortality; fertile; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, at stages throughout the pupal period, in stages of adults of both sexes.
Coordinates
chr2R:7502802-7503762:+
Coord C1 exon
chr2R:7502802-7503028
Coord A exon
chr2R:7503029-7503648
Coord C2 exon
chr2R:7503649-7503762
Length
620 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
CGCCTAATACTTGTTATAAGGTG
3' ss Score
3.89
Exon sequences
Seq C1 exon
GCTTCTTTATCAAACATTTCTCGGACACGGTCGAGTATGACGTGAACGGATTCTTGGAAAAGAATCGTGACACAGTCTCCAAGGAGTTGACGCAAGTGCTAAGCGAGTCCAACATGTCTCTGGCCAAGCAGGTGATGACCCTGGAGGAAATAGATACTCTGTGCGTGGATTCCGCTAAATCCTCCACCTTGGGCGGCCGCGTCGTGATCAGTGCTGGCCGCAAACAG
Seq A exon
GTTTGTGTTTGACCAGATTCTTCATGGACCCAACAATCGTATTGCTCCAATTTCGTCCAATTGTAATCGTTGTCTTATTGCTATTTGTATTTTCCATACGCTTGTCGTTCGCTCACCGCCAACTCCCTCGGATTGCCCAACAGCAAGGGAATGACACACGTCGAAGAGTTAGTTACCAACTTATTTAAATTAACAGCAATTGACTAACCCTAAACGAATAACCACAAACATTTTAACAATTTAATTCGACTTGGTACATTTGTTTTAATTAAAGTTACTAATTTAGTCCGGATTCAAATGACAAGGCTAAATGGCCCAGTAATGCTGATTAGAAAGAATCAAAGTTGCTTATAGACTAACAATTCACTACCTCCGCAAATAAATAATAATAATAAATGATGATAGGAATTTGTCAAATAGGTGATTCAATATATTATCAATAAAATATGACACGCGGACGAACGAACATATTAAATGAATTGGGTTAATGAGAATAAGTTTACTCAAAATGTAAAACTAGTTTGAAACTCTAAATCGATCTTATGTATTCATTTTCATTTTGACTGTGTTTGCCTATTTCCACACACGACCTACTAATTTCGCCTAATACTTGTTATAAG
Seq C2 exon
GTGGTGCCATCCAAGCAGCATAGAAAAACGGTGGGATCGCAGTTCCAGGAGAGTCTGGCGTCGCTGATATCTACGTTACATGCCACAACTCCGCACTATGTGCGCTGCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261397:FBtr0089745:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.8=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.3=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0088686

Other Inclusion Isoforms:
FBpp0088684
Other Skipping Isoforms:
FBpp0088685
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCAAACATTTCTCGGACACGGT
R:
CTTGATGCAGCGCACATAGTG
Band lengths:
334-954
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)