DmeINT0032140 @ dm6
Intron Retention
Gene
FBgn0261722 | fwe
Description
The gene flower is referred to in FlyBase by the symbol Dmelfwe (CG6151, FBgn0261722). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (3 unique). Gene sequence location is 3L:15810081..15816410. Its molecular function is described by: calcium channel activity. It is involved in the biological process described with 10 unique terms, many of which group under: programmed cell death; chemical homeostasis; neuron apoptotic process; regulation of apoptotic process; cation transport. 39 alleles are reported. The phenotypes of these alleles manifest in: tergum; egg chamber; cellular anatomical entity; larval thorax; visual system. The phenotypic classes of alleles include: phenotype; increased mortality; endocytosis defective; some die during larval stage.
Coordinates
chr3L:15810081-15813353:-
Coord C1 exon
chr3L:15813246-15813353
Coord A exon
chr3L:15810849-15813245
Coord C2 exon
chr3L:15810081-15810848
Length
2397 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TCCTTTTACTTTTTCAACAGAGC
3' ss Score
9.49
Exon sequences
Seq C1 exon
CATGGCCATTCCGCCCATTATTCTGTGCTTTGGACTGGCCAGCTTATTCGGCAGTGGGCTGATCTTTGGCACTGGCGTGGTTTACGGCATGATGGCGTTAGGCAAGAA
Seq A exon
GTGAGTATGGGGCACCTCGGAAAATCGCAGTTAAATTCAGAAAATTGCAGCTATGCCGCAGAATTTTTAAAAGAAATAGCTGGATTCAAATCAAACTGCATTGATTAGGCACTCATGTGTTCCTAAAACATTAATCTGAATTTAAAAAACAAGCTTTATGGTGAATTTCTGAATTTAAAGACGACTTCGATTATTGGGTTAGTTTAGTTGCTAAGCGAACGGAGGAGCGAGCGATTTAGTTAGTTTTGCTAAGCCATTTTTGCTAATCGAAACAAAATGTTTTCTCTATATTCCCACGATGTGCTTGCCACTGTGAAAACGCTTAAATAACTATAAACTAACACGTAGAGCTTCTCGAGAGGACATGGCCGCCGCTGCCACATCGCCCACACAGATGGCCGGCAGTCAGGCGGGCGGTCAGATGCAGATGGGCGGCGATCAGCATATCACACTCATGGAAGACCCCGATGTCTGGCGCCCCACATAAATTCCTAGCCGCGCCATTAGTAACTGCCAAAAAACCACACTCAGATACAGATAAAGACACAGATACTCAGATACACAGATTCACACACAAAATACTCCACTAGAAATGCGAACGATGCAAGAATTGATCGAGTAACAAATATTTTACGGCGCCTAGTTTTTAGTGTTCGTTCCGAGGATAAATGCAACTAAGTGAAAAGGAAAATCACTACAAAGCAGCATTGTAGGGCATCAGAGAACTAGTATACAGAACACCCCACCAAATACAAAAGAAAATTTAACGAAATTCTCATTACTGTTGAAACCGAGAGTGTTAGTAATCAAAGTATATTTTGGGCAAATGCATTTCCGTCATTCGACCCCCCGTTTTGCATGGCATTCGTACTATATTCGTATTCAAATTTTTTAATATCTTTCGTCGAGCGGTTGGTGTTGTTAAGAACTACAGTTAAATATATATAATATGCATAGAACAACTACTGATAACAATAACGTAACTCACATGTCAAACTCTGCAGCAAGCATATATTTTTAGTGAGAAACTATATTTGAAAGCTAACCGAATGCAAGAGGAACCGGAACCTATAAGTTAACCACAGCTTCCACACACTCACACACAGCTAATGCTAATGGAAAGCCACTGATGATATGGACAAGTGAATGTCGAGAACCTAGAGCAATATGTACAACTCAGAAATAATTAACTTTATATGCTTTGCTTCGATGTAAACCATAAAATTAAATGTTAAACGTTATTTGAGAATCGATTTGCTCGCGGGATAGTCACAATTTGAAATTGAACATAATCAAGCATACAGATAGAATATATATATATATATATATATACAACAAGTTGAGAATTTACCAGTTATATTTTTTAAATGTTGTAACCGAAAAGTGTCCATTTCAATTTGATGCATTGTTAGACGGTTTTCTTTTTAGACAATTACTTGGTTAATAGGATTTCGTTTTCGGGTTTCGTATGATTTCTTGTTTGCTAGAAGTATATGCTTATTTTTTTTAGTATACCTAAGTTATTTATAAGAGTTTATTCCAATCGTTTAACTTTGAAAGTCTGAGAAAAACGTTTTAAATTATTTTTGTTGTTGCCTATTGGCATTCTTACCACAGAAGCATTCCAAAATCTGTTTACTTTACGCATAAGTTATTGTATAGTTTAATTATTATAACTTTAAATATACATTATTTACAAGAAACTCGCGATAATTTATTACAATTTAGCCTTCGCCAGCAACTAAGAGTCTCACCTAAAGTAATCACGAATCATAATTAATTTGTTGAACTTTGTTAATCAATGAACGCAACACTAAAAATGAAAACATAAACATGTAAAATATTTCGTTAGAATTTGAACGCGCATGATTCAAATATCAAACACTTTGTACATGCCACCTGAAAACTGTCCAAAATCCTGCCGTTAAAGCCAAGTACATTCAACGACGGCCAACAGCGATTAACAACAATATACGATTTACGTTAACGAGTTCTGAACTTTGCTGCGTCCAAGAGATCACTACAGGCAAATACATTTTGAGCTTTCCTTTTTGTAATTGCTAACGATTGTAAATTGTATATTTTTCGTAGATTTTGTCAATGATTGATGACGTATTTATTTACTTGTGCACACGAAGAATGAAATTGATTTAGATTAGTTCCTGTAGTTCCCGGTATTTATGTAAGACTTGTATACTGTATTCATGCTGCCTTAGTTTTTTTTTGTTTGTCTTAGAAAAGCTTTTAGAAATATCTGGCTGTTCTATCGACCCTTTGGTTTCATGTAGGCAAAGTCACAGTTTTTAGTTGAGCACTTGTAAATTGTATAATTTTGGAAACCATTTGCCAATGTTTTGTACTCTAAAGACTAATGTAATCCTTTTACTTTTTCAACAG
Seq C2 exon
AGCATCCGCCGAGGACATGCGGGCAGCTGCTCAGCAAACCTTCGGAGGAAACACACCTGCCCAAACCAACGATCGAGCGGGGATTGTGAACAACGCCCAGCCCTTCTCCTTCACCGGTGCCGTGGGCACGGACAGCAATGTGTGATTCAGAAGCTAGCTGATCGGGATTTCGAGGAATCGAAGAGCTGGGTGTGCCGTGAGAAAACAAGACTCAAAACGCAACATTTGAAGGGCAAACCTAACCAAGAGAACATCGGCAGGCAATCATAAACATAATCATGTGCAATTTCTGATTGTTCAATAACCAACGCAAATGGATAACAAAAGTTTTTAAATCCGATTAGCTCTGATCTCTTTCTAGAGCAATCCAAATTACTCGATCAGAAAGAAGCCACCCAAAACAAGATCATTAAATTTTAAACCATTTTTGTATTAAATGTATGTAAATGTATATTGGTTTTAAAAGCGTTTTGCGTTTTCTGTATCCTATTAATTAATTGTGTTGCCTGTGTCCCATCATTCCAAAACATTTGGTTTCAACTAAGTAGAAATTGCAAATAAATTATTGAACGACATCACTAGCGAGGTGAAAAAAAAGATCATGTAAAATTTATGTTTAGTCATAGTTTAAATATACCTTAAATATATTTAAATGCATAATACTAAAATGTTTAAATTAATGCAAATAACACTATAAATATTGTATGTAAACCATATTAAAATTGAATTAAAGATACTTTAAATTATGTTAAATAAAATTAATTATAC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0261722:FBtr0075542:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF102334=Cg6151-P=FE(31.9=100)
A:
NA
C2:
PF102334=Cg6151-P=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0075297
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)