DmeINT0035088 @ dm6
Intron Retention
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16486341-16486905:-
Coord C1 exon
chrX:16486718-16486905
Coord A exon
chrX:16486585-16486717
Coord C2 exon
chrX:16486341-16486584
Length
133 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TTGTGATCGTATATTTGCAGGTA
3' ss Score
7.04
Exon sequences
Seq C1 exon
ATCACAAGGACCGCTTTCCGGATGGCGACCTGCCGCGCTGGAACTTCACCGACTTTATGCACAGCTTCATGATCGTGTTCCGGGTGCTCTGCGGAGAATGGATCGAGTCCATGTGGGACTGCATGTACGTGGGCGATGTCTCGTGCATTCCCTTCTTCTTGGCCACCGTTGTCATCGGCAATCTTGTG
Seq A exon
GTGAGTACTCTTATCGAACTGCTGACTTGTAAACGATGTTTACTGGCTATAATGCTGACTTATCGCCTCTAACCATGGCTTTAAGCATCGCATTGTAGATGTAGATAACTAAATTGTGATCGTATATTTGCAG
Seq C2 exon
GTACTTAACCTTTTCTTAGCCTTGCTTTTGTCCAATTTTGGCTCATCTAGCTTATCAGCGCCGACTGCCGATAACGATACGAATAAAATAGCCGAGGCCTTCAATCGAATTGGCCGATTTAAAAGTTGGGTTAAGCGTAATATTGCTGATTGTTTCAAGTTAATACGTAACAAATTGACAAATCAAATAAGTGATCAACCATCAGGTGAGAGGACCAACCAGATCAGTTGGATTTGGAGCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255:FBtr0074298:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(22.2=75.0)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.3=9.8),PF065128=Na_trans_assoc=PU(22.5=70.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0303597
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292722, FBpp0292723, FBpp0292724, FBpp0309614, FBpp0311217
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTCTTGGCCACCGTTGTC
R:
CTGGTTGGTCCTCTCACCTGA
Band lengths:
258-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)