DmeINT0035099 @ dm6
Intron Retention
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16463603-16466799:-
Coord C1 exon
chrX:16466495-16466799
Coord A exon
chrX:16464793-16466494
Coord C2 exon
chrX:16463603-16464792
Length
1702 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TATCCTATTAAAACTGGCAGATG
3' ss Score
4.18
Exon sequences
Seq C1 exon
GTCTTGTACTTAGCGATATTATCGAGAAGTACTTCGTGTCGCCGACCCTGCTCCGAGTGGTGCGTGTGGCGAAAGTGGGCCGTGTCCTTCGACTGGTGAAGGGAGCCAAGGGCATTCGGACACTGCTCTTCGCGTTGGCCATGTCGCTGCCGGCCCTGTTCAACATCTGCCTGCTGCTGTTCCTGGTCATGTTCATCTTTGCCATTTTCGGCATGTCGTTCTTCATGCACGTGAAGGAGAAGAGCGGCATCAACGACGTCTACAACTTCAAGACCTTTGGCCAGAGCATGATCCTGCTCTTTCAG
Seq A exon
GTAAGAGGCCCAGCCACAATTCCGTTGACGGTTTATGTTGTCTATTGTTGTTGTCGTTGGGTGATGTTGCCACAACCCACTGCTGAAATCGGAAACAACTAGAAGCTACGTGAAGCGATTAGCAAAGCCCATACCACTCTGACCATCTATCGGCGACGCTCTATCGCTGGAGTTTGGGCGTCGATCGATGGCCGGAAACGGATATGGGGCCGCCATTTGCGGCGACCATTATGCGTTCAGTTCAGTGGCAACATCACAATGTTGATTGAAGCTGCGGTAGTTGTTGGTAAAAGCTAAATTAGTGCGATTTTTTGATTAACCTACGATATCATTTATCAATTTGTTTAAATCCTCTGTCTATCTGTCTGCCTATCGGTTAACCATTTACTCTTTTACGTTCTCTCTGTACCAAGTACGCCAACAATCTAAACGATTCACCTTTTTACCTCTTTACTTTGCATCATGACTCTACTTAAGGGCCAAAAGTGATGTGGTCCCACGCTGGAGTCATGTAAAACCGGCTTTCAATTATCGTTTTGCACTTGTTTTTCTTTCGATTTGTACCTAACGTATACGCTTCTCTGTATATGCCTAATTTTAGTAAATTGTACAAAAAACAAATCTAATTCAGCTCTTTCAACAAACACCAAATGAAATGTTAAGTTTCCTCAAGACACCCCCGTCCTCCTGTCCAGAAAACAAACAATACCACCCCCCTAAAGTCTCGCCACCTCTATATCCATACAAATGTAGCTACTTAAATGCAAAATAAAACTAAAGGCAAACCAAAAGTATAGATTCGATCCTAAGATACAGGGTACACAGCCCCACATGTAGCTCTATATATATCTTTATCCCTCGCTCTCTATATCTATATCTTTTTAACTATCTTACTATTGCAAATGCTTTAAGTATTCAACTACTTCAATCTAAACCCATTCCAATGGGTGTCTACCGACTACCCAAGCTGCTACAAATGCTTGCCACGCTTACCGCTTTGAATCCCCTAGTTTTTGGGGCTAGAGTCCCTAGCAACTCCGCCCTTTCAGCCACGCCCCTGATCGCCCCTTCGACTGGGCCGAGGGGATTTCATATGGCTTACCAGCTTGCCTCGTTTTCGGGGCTGGATCAAAGCAAAGCAGCCAATTATCCGTTTAGTAACCGCAAACCGATTACACACTCAATGTATAACTACTAACTATAGCCGTAACTGTACTAACCACCTACCGTATGCCATAACTAGTTTGCTTAGCCGAGTGATCCCGGTACAAAACGTTTGACTAATGATGACTCTTCTTGTTATTGTATCTTCTGTCTTAAACTTCTCTCTCTCTCTCCCACCGCCCACATACGAACACTCCGAAAAAAAAAACACACCTCGAACGAACGACCTGACATGCATCGATAAATATCGATCTATAAATATCGATGCATCGAACCATGCCCAACCGATCGCACAACTGCCAATCCTATCCGATAAATTTGTATTCGATTGCGAATCGGTAACACGCTCGTATTGCGACTCGAAAACTATGATCCCATCCTCCTGATCCGAAATTTAAACTATCGATTCCAATATCAATGATCCCGAATGCACTATCCCCGAATGGCGTAATCCAAATCCAAACCCATTCGATAATACCAAATCCCACGTTCCAATATTCTTCTATATCCCAAATCCATATCCTATTAAAACTGGCAG
Seq C2 exon
ATGTCGACGTCAGCCGGTTGGGATGGTGTACTGGACGCCATTATCAATGAGGAAGCATGCGATCCACCCGACAACGACAAAGGCTATCCGGGCAATTGTGGTTCAGCGACCGTTGGAATAACGTTTCTCCTCTCATACCTAGTTATAAGCTTTTTGATAGTTATTAATATGTACATTGCTGTCATTCTCGAGAACTATAGTCAGGCCACCGAGGACGTGCAAGAGGGTCTAACCGACGACGACTACGACATGTACTATGAGATCTGGCAGCAATTCGATCCGGAGGGCACCCAGTACATACGCTATGATCAGCTGTCCGAATTCCTGGACGTACTGGAGCCCCCGCTGCAGATCCACAAACCGAACAAGTACAAGATCATATCGATGGACATACCCATCTGTCGCGGTGACCTCATGTACTGCGTCGACATCCTCGACGCCCTTACGAAAGACTTCTTTGCGCGGAAGGGCAATCCGATAGAGGAGACGGGTGAGATTGGTGAGATAGCGGCCCGCCCGGATACGGAGGGCTACGAGCCCGTCTCATCAACGCTGTGGCGTCAGCGTGAGGAGTACTGCGCCCGGCTAATCCAGCACGCCTGGCGAAAGCACAAGGCGCGCGGCGAGGGAGGTGGGTCCTTTGAGCCGGATACGGATCATGGCGATGGCGGTGATCCGGATGCCGGGGACCCGGCGCCCGATGAAGCAACGGACGGCGATGCGCCCGCTGGTGGAGATGGTAGTGTTAACGGTACTGCAGAAGGAGCTGCCGATGCCGATGAGAGTAATGTAAATAGTCCGGGTGAGGATGCAGCGGCGGCGGCAGCAGCAGCAGCAGCAGCGGCGGCGGCGGGCACGACGACGGCGGGAAGTCCCGGAGCGGGTAGCGCCGGGCGACAGACCGCCGTTCTCGTGGAGAGCGACGGGTTCGTGACGAAGAACGGCCACAAGGTGGTCATCCACTCGCGATCGCCGAGCATCACGTCGCGCACGGCGGATGTCTGAGCCAGGCCTCGCCCCCCCCTCCAAGATGCACGCGAGTATTAGCATGAGTACGTGTTGGATGTTGCATGTTGCATCAGCGATGCAGCAGCGACAGTGAGCTAACAACAACAGCAACAAGGCGAACAACAAGCATAATTTTCTGCTATATAATGAAAGAACACCATACAAACAAATACAACAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255:FBtr0074298:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.470
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(48.8=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(29.5=18.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0303597
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292723, FBpp0309614, FBpp0311217
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCATCAACGACGTCTACAA
R:
CGGATCGAATTGCTGCCAGAT
Band lengths:
343-2045
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)