DmeINT0035104 @ dm6
Intron Retention
Gene
FBgn0264255 | para
Description
NA
Coordinates
chrX:16505971-16506439:-
Coord C1 exon
chrX:16506348-16506439
Coord A exon
chrX:16506248-16506347
Coord C2 exon
chrX:16505971-16506247
Length
100 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATAAAATATCCCACAAACAGGCT
3' ss Score
4.83
Exon sequences
Seq C1 exon
TTATGTGACCATGGGTATAGATTTAGGTAATCTAGCAGCCCTGCGAACGTTTAGGGTGCTGCGAGCGCTTAAAACCGTAGCCATTGTGCCAG
Seq A exon
GTATGAAATCTGCATATGAAAGGCATATTAACTAGATTATTAAAATTCGTATACATTAATCAAATAAACACGATCACCCAATAAAATATCCCACAAACAG
Seq C2 exon
GCTTGAAGACCATCGTCGGCGCCGTCATCGAATCGGTGAAGAATCTGCGCGATGTGATTATCCTGACCATGTTCTCCCTGTCGGTGTTCGCGTTGATGGGCCTACAGATCTATATGGGCGTGCTCACGCAGAAGTGCATCAAGAAGTTCCCGCTGGACGGTTCCTGGGGCAATCTGACCGACGAGAACTGGGACTATCACAATCGCAATAGCTCCAATTGGTATTCCGAGGACGAGGGCATCTCATTTCCGTTATGCGGCAATATATCCGGTGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0264255:FBtr0074298:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(12.4=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(36.9=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
FBpp0303597
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0074073, FBpp0110321, FBpp0110322, FBpp0288560, FBpp0292672, FBpp0292673, FBpp0292674, FBpp0292675, FBpp0292676, FBpp0292677, FBpp0292678, FBpp0292679, FBpp0292680, FBpp0292681, FBpp0292682, FBpp0292683, FBpp0292684, FBpp0292685, FBpp0292686, FBpp0292687, FBpp0292688, FBpp0292689, FBpp0292690, FBpp0292691, FBpp0292692, FBpp0292693, FBpp0292694, FBpp0292695, FBpp0292696, FBpp0292697, FBpp0292698, FBpp0292699, FBpp0292700, FBpp0292701, FBpp0292702, FBpp0292703, FBpp0292704, FBpp0292705, FBpp0292706, FBpp0292707, FBpp0292708, FBpp0292709, FBpp0292710, FBpp0292712, FBpp0292713, FBpp0292714, FBpp0292715, FBpp0292716, FBpp0292717, FBpp0292718, FBpp0292719, FBpp0292720, FBpp0292721, FBpp0292722, FBpp0292723, FBpp0292724, FBpp0309614, FBpp0311217
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGTTTAGGGTGCTGCGAG
R:
TAGTCCCAGTTCTCGTCGGTC
Band lengths:
244-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)