DmeINT0036401 @ dm6
Intron Retention
Gene
FBgn0003353 | sei
Description
The gene seizure is referred to in FlyBase by the symbol Dmelsei (CG3182, FBgn0003353). It is a protein_coding_gene from Dmel. It has 4 annotated transcripts and 4 polypeptides (1 unique). Gene sequence location is 2R:24047411..24053035. Its molecular function is described by: voltage-gated potassium channel activity; voltage-gated cation channel activity. It is involved in the biological process described with: regulation of membrane potential; potassium ion transport; sensory perception of sound; potassium ion transmembrane transport. 24 alleles are reported. The phenotypes of these alleles manifest in: organelle; peripheral nervous system; myofibril; cellular anatomical entity; cytoplasm. The phenotypic classes of alleles include: phenotype; chemical resistant; viable; behavior defective. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed within 00-12 hour embryonic stages, at stages throughout the pupal period, in adult female stages.
Coordinates
chr2R:24049203-24050297:+
Coord C1 exon
chr2R:24049203-24049247
Coord A exon
chr2R:24049248-24049422
Coord C2 exon
chr2R:24049423-24050297
Length
175 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TTCGTTTCTATACTTTGCAGACT
3' ss Score
8.14
Exon sequences
Seq C1 exon
TACCTGTTCTGTTTTGATTTGCAAGTAAATAAGAAAGTGCATTAG
Seq A exon
GTAAGAAATCGCAGTTTTCGCCAATTTCAATCTGGAGTAAGTGGAAATTTTGGATTTATTATTAAGTTGTTTTTAAGCGAAGATTTATTTGAATTTGCTTACGAATCCGGATATTCTGAGCTTTGCGAATGTTTGATTATAATTTGCAACACTTTTTCGTTTCTATACTTTGCAG
Seq C2 exon
ACTTAAAAATGTCCCACAAATCTTGCGTGGAACTGAGCGAAATTCGAAAATTGGATAAAATAGTGCAGCAATGCGAGCTGTACATGTCCAACAACAATATTAACGATAATGCGGCCAAGAAACCGCCTGTGAAGGAATTCAAGCGCAATTGCCCTGCAAAATCGAACAAATTTGTGGAGAGGGAACTCTTCTCGCTCATGTGCAACCTGAACAAGATTGAAAAGAAGCAGGTTTTCGTTTCAGATATCCTGATTAACGCCAGCATGTTCGACGACAAGAAGGAGAGTTTGGCGCGGTTTCCGAAAAACGTGTCCGACCACAACACTCTGGTGTACCACAAATTCCTGAGGACTCGACCCACTAACGATGATGAAGCCCTAAAGCTGAAGGCTGGTGGAAAATCGAAGGAGAGGCCAGGCACGAAAATCACGGCAGATTGCTTCTTTTCGCCTCTTCTATTCAAAATCAACAACAAAAGGGAGTGCCTGAAAAAAGTGAAGCCCATGAAGGGGGAAAATGCTGTCGAAACCAATGGTATCCCACTCGAATCCAAGCCAAGTCAGCACAAAAAGCAGAAAAGTTTCAAGAAATGCATTAAGTGCGACAAGAAGAAGCTGTACATTAAGAACTATCAGGTGTCCGCCCGGCGGGAATGCGATCTCCTCTGCTCGTATGATCCCTTGCGTAAAAATAACGCCGACCTCTTCCAGACCCACAAAGGCACTTCTTACGAGTGCATGTTCAAGAACCTCAAATACAACCAGGCCGAAAAGCCGACGGACAACGTGATGGGGAACTCCTACGACGACATGCTGGACAAGGAGGCTCTGCTCGGATCAAAAAGCGAGCCGAAGGGGCAGGATCCCAATGACATG
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0003353:FBtr0072169:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.156
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
FBpp0072078, FBpp0072079, FBpp0310000
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTTCTGTTTTGATTTGCAAGT
R:
AGGTTGCACATGAGCGAGAAG
Band lengths:
252-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Neural diversity
- Neurogenesis
- Neuronal activity
- Splicing factor regulation (brain)
- Splicing factor regulation (SL2)