DreALTA0000118-2/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68189352-68189656:-
Coord C1 exon
chr5:68189572-68189656
Coord A exon
chr5:68189427-68189487
Coord C2 exon
chr5:68189352-68189426
Length
61 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
CTGACCCTGCTTTGAATAAGATG
3' ss Score
1.91
Exon sequences
Seq C1 exon
ATTATGGGCAGCGATGAGCGGAGGAGGACTCTGACTCCTCTGGCTCTCAGAGAAAGATACAGCGCTCTGAATGAACCGGCAATGG
Seq A exon
ATGTGAGCTGCAGCATCAGATTTGCTGAACTCTTGAGCCAATGATGGTCTGGTTTCTGCAG
Seq C2 exon
CATCACTGAGCGCCATGGAAAGGACGGAGTTAAAGATGGCTTTAATAGCTGAACAGCTAGGCCTGAGCTGGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093-40-44,40-43-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0053117=Death=PU(16.0=52.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCGGAGGAGGACTCT
R:
TCAGGCCTAGCTGTTCAGCTA
Band lengths:
139-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]