DreEX0000360 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68182556-68189656:-
Coord C1 exon
chr5:68189572-68189656
Coord A exon
chr5:68189352-68189426
Coord C2 exon
chr5:68182556-68182687
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGATGGTCTGGTTTCTGCAGCAT
3' ss Score
6.96
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATTATGGGCAGCGATGAGCGGAGGAGGACTCTGACTCCTCTGGCTCTCAGAGAAAGATACAGCGCTCTGAATGAACCGGCAATGG
Seq A exon
CATCACTGAGCGCCATGGAAAGGACGGAGTTAAAGATGGCTTTAATAGCTGAACAGCTAGGCCTGAGCTGGGCTG
Seq C2 exon
AGTTGGGACGGGAACTGCAGTTTAATGTAGATGAAATAAATAAGATCCGTGTGGAGAATCCCAACTCCCTTTTAGAGCAGAGCTCAACGCTGCTCAACCTGTGGGCCGCCCGAGAGGGGAAGAGAGCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093_MULTIEX1-1/2=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(16.0=52.0)
C2:
PF0053117=Death=FE(53.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGAGCGGAGGAGGACTCT
R:
CACAGGTTGAGCAGCGTTGAG
Band lengths:
176-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]