MmuEX6034885 @ mm10
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23120535-23122900:+
Coord C1 exon
chr8:23120535-23120613
Coord A exon
chr8:23120900-23120974
Coord C2 exon
chr8:23122769-23122900
Length
75 bp
Sequences
Splice sites
3' ss Seq
AACCCAATGCATCTCTCCAGGTT
3' ss Score
6.73
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GGCAGTGGAGCAGAAGACAGGAGAAGGACCCTGACACCCCTGACCCTTCGATACAGCATTCTCAGCGAGTCGCGGCTGG
Seq A exon
GTTTTACCAGTGACACAGACCGTGTCGAAATGAGGATGGCTGTCATCAGAGAACACCTCGGCCTAAGCTGGGCAG
Seq C2 exon
AGCTGGCCCGGGAGCTGCAGTTCAGCGTGGAAGACATCAACCGGATCCGTGTAGAAAACCCTAACTCCTTGTTGGACCAGAGTACAGCCTTGCTGACCCTCTGGGTGGACCGTGAAGGCGAAAATGCAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'37-62,'37-60,46-62=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(19.0=61.5)
C2:
PF0053117=Death=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGACCCTTCGATACAG
R:
TTTGCATTTTCGCCTTCACGG
Band lengths:
174-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types