HsaEX6080548 @ hg19
Exon Skipping
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41543670-41546107:-
Coord C1 exon
chr8:41546029-41546107
Coord A exon
chr8:41545674-41545748
Coord C2 exon
chr8:41543670-41543801
Length
75 bp
Sequences
Splice sites
3' ss Seq
AATCTAATGCTTCTCCCCAGGTT
3' ss Score
8.31
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAAGTGGAGCCGAAGATAGGAGAAGGACCCCGACGCCCCTGGCCCTGCGATACAGCATTCTCAGTGAGTCCACACCAG
Seq A exon
GTTCTCTCAGTGGGACAGAGCAGGCAGAGATGAAGATGGCTGTTATCTCAGAGCACCTCGGTCTCAGCTGGGCAG
Seq C2 exon
AGTTGGCCCGGGAGCTGCAGTTCAGTGTGGAAGACATCAACAGGATCCGAGTGGAAAATCCCAACTCCCTGTTGGAGCAGAGTGTGGCCTTGCTGAACCTCTGGGTCATCCGTGAAGGCCAAAACGCAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-'38-42,'38-41,39-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.386 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0053117=Death=PU(19.0=61.5)
C2:
PF0053117=Death=FE(52.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCGATACAGCATTCTC
R:
TGTTTGCGTTTTGGCCTTCAC
Band lengths:
169-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)