RnoEX0009327 @ rn6
Exon Skipping
Gene
ENSRNOG00000018241 | Ank1
Description
ankyrin 1 [Source:RGD Symbol;Acc:1309620]
Coordinates
chr16:73724638-73765805:-
Coord C1 exon
chr16:73765727-73765805
Coord A exon
chr16:73765376-73765450
Coord C2 exon
chr16:73724638-73724738
Length
75 bp
Sequences
Splice sites
3' ss Seq
AACCCAATGCATCTTCCCAGGTT
3' ss Score
5.19
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCAGTGGAGCAGAAGACAGGAGAAGGACCCTGACGCCCTTGACTCTTCGCTATAGCATTCTCAGCGAGTCCCGGCTGG
Seq A exon
GTTTTACCAGTGACACAGACCGTGTTGAAATGAAGATGGCTGTCATCAGGGAGCACCTCGGCCTCAGCTGGGCAG
Seq C2 exon
CACCAGTGGATGCAGGGATGATGTTCTGGGCTGCCCCACGGTCATTACACCACAGCTTTCCAGAGGGGCCATCCACAGTCTTCTGAGTGGTAGTGATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018241-'47-47,'47-46,48-47
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGGAGCAGAAGACAGGA
R:
CACTCAGAAGACTGTGGATGGC
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]