DreEX0000361 @ danRer10
Exon Skipping
Gene
ENSDARG00000059093 | ANK1 (1 of 2)
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr5:68178535-68189426:-
Coord C1 exon
chr5:68189352-68189426
Coord A exon
chr5:68182556-68182687
Coord C2 exon
chr5:68178535-68178603
Length
132 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTAATTCCTGTGCAGAGT
3' ss Score
8.42
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CATCACTGAGCGCCATGGAAAGGACGGAGTTAAAGATGGCTTTAATAGCTGAACAGCTAGGCCTGAGCTGGGCTG
Seq A exon
AGTTGGGACGGGAACTGCAGTTTAATGTAGATGAAATAAATAAGATCCGTGTGGAGAATCCCAACTCCCTTTTAGAGCAGAGCTCAACGCTGCTCAACCTGTGGGCCGCCCGAGAGGGGAAGAGAGCCAAAA
Seq C2 exon
TGGACAGCCTGTACGTGGCCCTCAAGAGCATCGACCGAGTGGACATTGTGAACATGATGGAGGGCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059093_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.256
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(16.0=52.0)
A:
PF0053117=Death=FE(53.1=100)
C2:
PF0053117=Death=FE(27.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCACTGAGCGCCATGGAAAG
R:
CTGGCCCTCCATCATGTTCAC
Band lengths:
142-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]