GgaEX1065919 @ galGal3
Exon Skipping
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2669409-2670130:-
Coord C1 exon
chr22:2670026-2670130
Coord A exon
chr22:2669746-2669877
Coord C2 exon
chr22:2669409-2669555
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGATGCCGTGTCTCTCCCAGAGC
3' ss Score
7.68
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGGAGTTGTGACCCCCTCTTCTCTTCCAGGCTCTCTGAGCAGCACCGACAGGGCAGACCAGAAGATGATCGACATTGCAGAGCAGCTTGGCCTCAGCTGGGCAG
Seq A exon
AGCTGGCACGTGAGCTGCAGTTTGGGGTGGATGACATCAACAGGATTCGTGTGGAGAACCCTAACTCCTTGCTGGAGCAGAGCATAGCCTTGCTTAACCTCTGGGTCAGCCGCGAGGGCAAGGGTGTCAAAA
Seq C2 exon
TTGAGAACCTGTACACAGCGCTGAGGAACATTGACCGCAGCGAGATCATCAGCACGTTGGAGGGCTCCGGCCGGCAGAGCCGCAGCATGAAGGGCAGCTGGCGTTACATGGACAGGGACTATTCACTCTCGCCCTCCCAGATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594-'42-40,'42-39,43-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.040
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(19.0=44.4)
A:
PF0053117=Death=FE(52.4=100)
C2:
PF0053117=Death=PD(27.4=46.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTTGTGACCCCCTCTTCT
R:
TGGGAGGGCGAGAGTGAATAG
Band lengths:
242-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]