MmuEX6034884 @ mm9
Exon Skipping
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:24231372-24234450:+
Coord C1 exon
chr8:24231372-24231446
Coord A exon
chr8:24233241-24233372
Coord C2 exon
chr8:24234304-24234450
Length
132 bp
Sequences
Splice sites
3' ss Seq
TCTTGGTTCTTTGCCTACAGAGC
3' ss Score
8.61
5' ss Seq
AGAGTCAGT
5' ss Score
-0.66
Exon sequences
Seq C1 exon
GTTTTACCAGTGACACAGACCGTGTCGAAATGAGGATGGCTGTCATCAGAGAACACCTCGGCCTAAGCTGGGCAG
Seq A exon
AGCTGGCCCGGGAGCTGCAGTTCAGCGTGGAAGACATCAACCGGATCCGTGTAGAAAACCCTAACTCCTTGTTGGACCAGAGTACAGCCTTGCTGACCCTCTGGGTGGACCGTGAAGGCGAAAATGCAAAGA
Seq C2 exon
TGGAGAATTTGTACACAGCCCTGCGGAACATCGACAGGAGTGAGATTGTTAACATGTTGGAGGGCTCCGGCAGGCAGAGCAGAAACCTCAAACCAGAGCGGAGACATGGGGACCGGGAGTACTCATTGTCACCCTCCCAGGTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-'38-46,'38-44,39-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.512
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(19.0=61.5)
A:
PF0053117=Death=FE(52.4=100)
C2:
PF0053117=Death=PD(27.4=46.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTACCAGTGACACAGACCGT
R:
CCTGGGAGGGTGACAATGAGT
Band lengths:
214-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: