GgaEX1065919 @ galGal4
Exon Skipping
Gene
ENSGALG00000003594 | chAnk1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NJR5]
Coordinates
chr22:2615184-2619861:-
Coord C1 exon
chr22:2619757-2619861
Coord A exon
chr22:2619477-2619608
Coord C2 exon
chr22:2615184-2615267
Length
132 bp
Sequences
Splice sites
3' ss Seq
AGATGCCGTGTCTCTCCCAGAGC
3' ss Score
7.68
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGGAGTTGTGACCCCCTCTTCTCTTCCAGGCTCTCTGAGCAGCACCGACAGGGCAGACCAGAAGATGATCGACATTGCAGAGCAGCTTGGCCTCAGCTGGGCAG
Seq A exon
AGCTGGCACGTGAGCTGCAGTTTGGGGTGGATGACATCAACAGGATTCGTGTGGAGAACCCTAACTCCTTGCTGGAGCAGAGCATAGCCTTGCTTAACCTCTGGGTCAGCCGCGAGGGCAAGGGTGTCAAAA
Seq C2 exon
GGCAACGAAGTCCTCCATCTCCCTGGGGAGCATGTGACTGAGGAGCAGTTCACAGATGAACAAGGCAATATAATCACCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594_MULTIEX3-1/5=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=0.000 C2=0.193
Domain overlap (PFAM):
C1:
PF0053117=Death=PU(19.0=44.4)
A:
PF0053117=Death=FE(52.4=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTGTGACCCCCTCTTC
R:
TCTTGGTGATTATATTGCCTTGTTCA
Band lengths:
186-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]